蛋白15N弛豫色散测量中溶质的潜在虚假贡献

Borja Mateos , Oscar Millet
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引用次数: 0

摘要

当这些运动在微秒到毫秒的时间尺度上时,可以通过弛豫色散方法来严格量化热力学、动力学和结构变化。尽管过去做了一些努力,但仍不清楚溶质如何调节从弛豫色散分析中提取的拟合参数。在这里,我们研究了在经过两态化学交换的酶上15N弛豫分散的系统测量是如何在不同的辅质(从离子到变性剂)存在的情况下,从次要态(热力学)和交换速率(动力学)的角度来影响的。co溶质诱导的变化是温和的,但可以显著影响蛋白质功能。具体来说,汇率可以与汇率中的微妙杠杆联系在一起。对于大多数规范残留物,即没有由溶质引起的虚假影响,两种状态之间的化学位移差(Δω)基本上不受预期水共振位移的影响。然而,溶剂暴露残留物并不总是遵循这一规范趋势。相反,残基-溶质相互作用大到足以引起残基特定位移,最终调节拟合参数Δω。不幸的是,溶剂可及性分析不够准确,无法先验地区分典型和非典型残留物,需要在不同浓度的溶质下进行完整的实验分析。这一观察结果的目的是作为一个警告的话,在单一溶剂条件下,含有大量的co溶质松弛分散的测量。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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On the potentially spurious contributions of cosolutes in protein 15N relaxation dispersion measurements

A rigorous quantification of the thermodynamics, kinetic and structural changes can be approached by relaxation dispersion methods, when such motions are in the microsecond to millisecond timescale. Albeit some past efforts, it is still unclear how cosolutes modulate the fitted parameters extracted from relaxation dispersion analyses. Here, we have studied how the systematic measurement of 15N relaxation dispersion on a well-studied enzyme, undergoing two-state chemical exchange, are affected in terms of the populations of the minor state (thermodynamics) and the exchange rates (kinetics) in the presence of different cosolutes, from ions to denaturants. The cosolute-induced changes are modest but can significantly affect protein function. Specifically, exchange rates can be associated to a subtle leverage in the exchange rates. For most canonical residues, i.e. without spurious effects caused by the cosolute, the chemical shift difference (Δω) between both states is essentially unaffected with respect to the expected shift of water resonance. Yet, solvent exposed residues do not always follow this canonical trend. Instead, residue-cosolute interactions are large enough to induce a residue specific shift that ultimately modulates the fitted parameter Δω. Unfortunately, solvent accessibility analysis is not accurate enough to a priori discriminate between canonical and non-canonical residues and a full experimental analysis at varying concentrations of the cosolute is required. This observation aims to act as a word of caution for measurements of relaxation dispersion at a single-solvent condition that contains large amounts of cosolutes.

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