基于核磁共振代谢组学的数据库和软件。

James J Ellinger, Roger A Chylla, Eldon L Ulrich, John L Markley
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引用次数: 82

摘要

新的软件和日益复杂的核磁共振代谢物光谱数据库正在推进核磁共振光谱识别和量化代谢物生物标志物和代谢通量研究溶液中的小分子的独特能力。公共和商业数据库现在包含实验1D 1H, 13C和2D 1H-13C光谱,提取了上千种化合物的光谱参数和上千种化合物的理论数据。包含复杂代谢研究实验核磁共振数据的公共数据库正在兴起。这些数据库为基于核磁共振的化学计量学和定量代谢组学研究的新计算算法的构建和测试提供了至关重要的信息。在这篇综述中,我们重点介绍了支持定量NMR方法来分析复杂生物混合物的1D和2D NMR光谱的数据库和软件工具。
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Databases and Software for NMR-Based Metabolomics.

New software and increasingly sophisticated NMR metabolite spectral databases are advancing the unique abilities of NMR spectroscopy to identify and quantify small molecules in solution for studies of metabolite biomarkers and metabolic flux. Public and commercial databases now contain experimental 1D 1H, 13C and 2D 1H-13C spectra and extracted spectral parameters for over a thousand compounds and theoretical data for thousands more. Public databases containing experimental NMR data from complex metabolic studies are emerging. These databases are providing information vital for the construction and testing of new computational algorithms for NMR-based chemometric and quantitative metabolomics studies. In this review we focus on database and software tools that support a quantitative NMR approach to the analysis of 1D and 2D NMR spectra of complex biological mixtures.

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