绘制俄罗斯Verkhnekamsk钾肥矿区产盐杆菌SMB35T、盐杆菌sp. MH3R3-1和盐杆菌sp. SMB17的基因组序列。

Q3 Biochemistry, Genetics and Molecular Biology Standards in Genomic Sciences Pub Date : 2017-07-19 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0251-5
Björn E Olsson, Ekaterina S Korsakova, Lyudmila N Anan'ina, Anna A Pyankova, Olga V Mavrodi, Elena G Plotnikova, Dmitri V Mavrodi
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引用次数: 10

摘要

盐单胞菌是中度嗜盐细菌,被研究为原核渗透适应的模型和生物技术应用的酶和化学物质的来源。尽管在了解这些生物的多样性方面取得了进展,但我们在基因组序列水平上解释盐单胞菌的生态、代谢和生化特征的能力仍然有限。本研究提出了从俄罗斯Verkhnekamsk盐矿区钾矿尾矿中分离到的Salinicola socius SMB35T、Salinicola sp. MH3R3-1和Chromohalobacter sp. SMB17的基因组草图,解决了这一空白。这些基因组的分析证实了外托因和季胺对盐单胞菌耐受渗透胁迫和适应高盐环境的能力的重要性。该研究还发现,嗜盐杆菌和Salinicola共享75-90%的预测蛋白质组,但也包含一组属特异性基因,在Salinicola中约为0.5 Mbp。这些属特异性的基因组片段可能有助于盐单菌科的表型多样性,以及这些生物适应不断变化的环境条件和定居新生态位的能力。
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Draft genome sequences of strains Salinicola socius SMB35T, Salinicola sp. MH3R3-1 and Chromohalobacter sp. SMB17 from the Verkhnekamsk potash mining region of Russia.

Halomonads are moderately halophilic bacteria that are studied as models of prokaryotic osmoadaptation and sources of enzymes and chemicals for biotechnological applications. Despite the progress in understanding the diversity of these organisms, our ability to explain ecological, metabolic, and biochemical traits of halomonads at the genomic sequence level remains limited. This study addresses this gap by presenting draft genomes of Salinicola socius SMB35T, Salinicola sp. MH3R3-1 and Chromohalobacter sp. SMB17, which were isolated from potash mine tailings in the Verkhnekamsk salt deposit area of Russia. The analysis of these genomes confirmed the importance of ectoines and quaternary amines to the capacity of halomonads to tolerate osmotic stress and adapt to hypersaline environments. The study also revealed that Chromohalobacter and Salinicola share 75-90% of the predicted proteome, but also harbor a set of genus-specific genes, which in Salinicola amounted to approximately 0.5 Mbp. These genus-specific genome segments may contribute to the phenotypic diversity of the Halomonadaceae and the ability of these organisms to adapt to changing environmental conditions and colonize new ecological niches.

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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
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