富营养化湖泊蓝藻聚集体中少盐嗜水杆菌TH1-2T高质量基因组序列草图

Q3 Biochemistry, Genetics and Molecular Biology Standards in Genomic Sciences Pub Date : 2017-12-02 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0284-9
Haiyuan Cai, Yonghui Zeng
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引用次数: 1

摘要

少盐嗜水乳杆菌TH1-2T是从富营养化湖泊的蓝藻菌群中分离出来的阿尔法变形菌科的根杆菌科成员。基因组草图包括3711627 bp和3489个预测的蛋白质编码基因。菌株TH1-2T的基因组有270个编码肽酶的基因。金属肽酶和丝氨酸肽酶是最常见的。菌株TH1-2T基因组中还存在大量编码碳水化合物活性酶(141个CAZymes)的基因。在CAZymes中,鉴定出47个糖苷水解酶家族、37个糖基转移酶家族、38个碳水化合物酯酶家族、9个辅助活性家族、7个碳水化合物结合模块家族和3个多糖裂解酶家族。因此,菌株TH1-2T具有大量的转运体(91个),主要是atp结合盒转运体(61个)和tonb依赖转运体(28个)。主要的tbdt是I族,它由各种溶解有机物的转运体组成。这些基因组特征表明对蓝藻聚集体微环境的适应。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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High-quality draft genome sequence of Aquidulcibacter paucihalophilus TH1-2T isolated from cyanobacterial aggregates in a eutrophic lake.

Aquidulcibacter paucihalophilus TH1-2T is a member of the family Caulobacteraceae within Alphaproteobacteria isolated from cyanobacterial aggregates in a eutrophic lake. The draft genome comprises 3,711,627 bp and 3489 predicted protein-coding genes. The genome of strain TH1-2T has 270 genes encoding peptidases. And metallo and serine peptidases were found most frequently. A high number of genes encoding carbohydrate active enzymes (141 CAZymes) also present in strain TH1-2T genome. Among CAZymes, 47 glycoside hydrolase families, 37 glycosyl transferase families, 38 carbohydrate esterases families, nine auxiliary activities families, seven carbohydrate-binding modules families, and three polysaccharide lyases families were identified. Accordingly, strain TH1-2T has a high number of transporters (91), the dominated ones are ATP-binding cassette transporters (61) and TonB-dependent transporters (28). Major TBDTs are Group I, which consisted of transporters for various types of dissolved organic matter. These genome features indicate adaption to cyanobacterial aggregates microenvironments.

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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
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