纤维素溶解内生菌 Chitinophaga costaii A37T2T 的基因组序列草案。

Q3 Biochemistry, Genetics and Molecular Biology Standards in Genomic Sciences Pub Date : 2017-09-06 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0262-2

Diogo N Proença, William B Whitman, Nicole Shapiro, Tanja Woyke, Nikos C Kyrpides, Paula V Morais

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摘要

在此，我们报告了从松柏内生群落中分离出的 Chitinophaga costai A37T2T（=CIP 110584T，=LMG 27458T）的基因组序列草案。C. costaii A37T2T 的基因组总大小为 5.07 Mbp，包含 4204 个编码序列。菌株 A37T2T 编码多个可能参与纤维素分解、几丁质分解和脂肪分解活动的基因。与 C. pinensis DSM 2588T 的完整基因组相比，该基因组有 1145 个独特基因，被归入 109 个同源组簇。基因组信息表明，菌株 A37T2T 具有与植物新陈代谢相互作用的潜力。由于与松树枯萎病有关的细菌基因组数量很少，这项工作为该领域做出了贡献。

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Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2^T.

Here we report the draft genome sequence of Chitinophaga costai A37T2^T (=CIP 110584^T, =LMG 27458^T), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37T2^T is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2^T encoded multiple genes likely involved in cellulolytic, chitinolytic and lipolytic activities. This genome showed 1145 unique genes assigned into 109 Cluster of Orthologous Groups in comparison with the complete genome of C. pinensis DSM 2588^T. The genomic information suggests the potential of the strain A37T2^T to interact with the plant metabolism. As there are only a few bacterial genomes related to Pine Wilt Disease, this work provides a contribution to the field.