{"title":"从新泽西州黄铁矿露头中分离出的亚砷酸盐和硫化物氧化剂Bosea sp. WAO的基因组序列草图。","authors":"Alexandra B Walczak, Nathan Yee, Lily Y Young","doi":"10.1186/s40793-018-0312-4","DOIUrl":null,"url":null,"abstract":"<p><p>This genome report describes the draft genome and physiological characteristics of <i>Bosea</i> sp. WAO (=DSM 102914), a novel strain of the genus <i>Bosea</i> in the family <i>Bradyrhizobiaceae</i>. <i>Bosea</i> sp. WAO was isolated from pulverized pyritic shale containing elevated levels of arsenic. This aerobic, gram negative microorganism is capable of facultative chemolithoautotrophic growth under aerobic conditions by oxidizing the electron donors arsenite, elemental sulfur, thiosulfate, polysulfide, and amorphous sulfur. The draft genome is of a single circular chromosome 6,125,776 bp long consisting of 21 scaffolds with a G + C content of 66.84%. A total 5727 genes were predicted of which 5665 or 98.92% are protein-coding genes and 62 RNA genes. We identified the genes <i>aioA</i> and <i>aioB</i>, which encode the large and small subunits of the arsenic oxidase respectively. We also identified the genes for the complete sulfur oxidation pathway <i>sox</i> which is used to oxidize thiosulfate to sulfate.</p>","PeriodicalId":21965,"journal":{"name":"Standards in Genomic Sciences","volume":"13 ","pages":"6"},"PeriodicalIF":0.0000,"publicationDate":"2018-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40793-018-0312-4","citationCount":"5","resultStr":"{\"title\":\"Draft genome sequence of <i>Bosea</i> sp. WAO an arsenite and sulfide oxidizer isolated from a pyrite rock outcrop in New Jersey.\",\"authors\":\"Alexandra B Walczak, Nathan Yee, Lily Y Young\",\"doi\":\"10.1186/s40793-018-0312-4\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>This genome report describes the draft genome and physiological characteristics of <i>Bosea</i> sp. WAO (=DSM 102914), a novel strain of the genus <i>Bosea</i> in the family <i>Bradyrhizobiaceae</i>. <i>Bosea</i> sp. WAO was isolated from pulverized pyritic shale containing elevated levels of arsenic. This aerobic, gram negative microorganism is capable of facultative chemolithoautotrophic growth under aerobic conditions by oxidizing the electron donors arsenite, elemental sulfur, thiosulfate, polysulfide, and amorphous sulfur. The draft genome is of a single circular chromosome 6,125,776 bp long consisting of 21 scaffolds with a G + C content of 66.84%. A total 5727 genes were predicted of which 5665 or 98.92% are protein-coding genes and 62 RNA genes. We identified the genes <i>aioA</i> and <i>aioB</i>, which encode the large and small subunits of the arsenic oxidase respectively. We also identified the genes for the complete sulfur oxidation pathway <i>sox</i> which is used to oxidize thiosulfate to sulfate.</p>\",\"PeriodicalId\":21965,\"journal\":{\"name\":\"Standards in Genomic Sciences\",\"volume\":\"13 \",\"pages\":\"6\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2018-04-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1186/s40793-018-0312-4\",\"citationCount\":\"5\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Standards in Genomic Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/s40793-018-0312-4\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2018/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Standards in Genomic Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s40793-018-0312-4","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2018/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 5
摘要
本基因组报告描述了慢生根瘤菌科Bosea属新菌株Bosea sp. WAO (=DSM 102914)的基因组草图和生理特性。Bosea sp. WAO是从含有高浓度砷的粉状黄铁矿页岩中分离出来的。这种需氧革兰氏阴性微生物能够在需氧条件下通过氧化电子供体亚砷酸盐、单质硫、硫代硫酸盐、多硫化物和无定形硫进行兼性化能自养生长。基因组草图为一条长6,125,776 bp的单圆形染色体,由21个支架组成,G + C含量为66.84%。共预测基因5727个,其中蛋白编码基因5665个,占98.92%,RNA基因62个。我们鉴定出分别编码砷氧化酶大亚基和小亚基的基因aioA和aioB。我们还鉴定了硫氧化完整途径sox的基因,该途径用于将硫代硫酸盐氧化为硫酸盐。
Draft genome sequence of Bosea sp. WAO an arsenite and sulfide oxidizer isolated from a pyrite rock outcrop in New Jersey.
This genome report describes the draft genome and physiological characteristics of Bosea sp. WAO (=DSM 102914), a novel strain of the genus Bosea in the family Bradyrhizobiaceae. Bosea sp. WAO was isolated from pulverized pyritic shale containing elevated levels of arsenic. This aerobic, gram negative microorganism is capable of facultative chemolithoautotrophic growth under aerobic conditions by oxidizing the electron donors arsenite, elemental sulfur, thiosulfate, polysulfide, and amorphous sulfur. The draft genome is of a single circular chromosome 6,125,776 bp long consisting of 21 scaffolds with a G + C content of 66.84%. A total 5727 genes were predicted of which 5665 or 98.92% are protein-coding genes and 62 RNA genes. We identified the genes aioA and aioB, which encode the large and small subunits of the arsenic oxidase respectively. We also identified the genes for the complete sulfur oxidation pathway sox which is used to oxidize thiosulfate to sulfate.