弛豫色散核磁共振光谱研究蛋白质动力学和蛋白质-配体相互作用的综述

Q1 Biochemistry, Genetics and Molecular Biology Current Protocols in Protein Science Pub Date : 2018-04-16 DOI:10.1002/cpps.57
Erik Walinda, Daichi Morimoto, Kenji Sugase
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引用次数: 7

摘要

蛋白质和核酸是所有生物过程的核心。核磁共振波谱已被证明是研究这些大分子在不同时间尺度上的动力学的极好方法。弛豫率和异核核超豪瑟效应值可以在微秒到纳秒的时间尺度上解析运动,剩余偶极耦合可以在亚微秒到毫秒的时间尺度上提供信息,甚至更慢的秒到小时的动力学也可以通过氢交换实验来解析。弛豫色散实验特别有价值,因为它们在微到毫秒的时间尺度上解决运动,包括与配体结合,酶催化和域-域打开相关的生物分子运动。这些实验提供了“看不见的”激发态的结构、动力学和热力学信息。弛豫分散不仅可以应用于单个生物分子,还可以应用于蛋白质-配体复合物的结合和解离动力学和热力学研究。我们回顾了弛豫色散方法的最新进展,概述了R1ρ弛豫色散实验,并讨论了在生物分子相互作用中的应用。©2018 by John Wiley &儿子,Inc。
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Overview of Relaxation Dispersion NMR Spectroscopy to Study Protein Dynamics and Protein-Ligand Interactions
Proteins and nucleic acids are central to all biological processes. NMR spectroscopy has proven to be excellent for studying the dynamics of these macromolecules over various timescales. Relaxation rates and heteronuclear nuclear Overhauser‐effect values can resolve motion on pico‐ to nanosecond timescales, residual dipolar couplings provide information on submicro‐ to millisecond timescales, and even slower dynamics over seconds to hours can be resolved by hydrogen‐exchange experiments. Relaxation dispersion experiments are especially valuable because they resolve motion on micro‐ to millisecond timescales, encompassing biomolecular motions associated with ligand binding, enzymatic catalysis, and domain‐domain opening. These experiments provide structural, kinetic, and thermodynamic information on “invisible” excited conformational states. Relaxation dispersion can be applied not only to single biomolecules but also to protein‐ligand complexes to study the kinetics and thermodynamics of association and dissociation. We review recent developments in relaxation dispersion methodology, outline the R1ρ relaxation dispersion experiment, and discuss application to biomolecular interactions. © 2018 by John Wiley & Sons, Inc.
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来源期刊
Current Protocols in Protein Science
Current Protocols in Protein Science Biochemistry, Genetics and Molecular Biology-Biochemistry
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期刊介绍: With the mapping of the human genome, more and more researchers are exploring protein structures and functions in living organisms. Current Protocols in Protein Science provides protein scientists, biochemists, molecular biologists, geneticists, and others with the first comprehensive suite of protocols for this growing field.
期刊最新文献
Issue Information De Novo Protein Design Using the Blueprint Builder in Rosetta Methods for Expression of Recombinant Proteins Using a Pichia pastoris Cell-Free System Histone Purification Combined with High-Resolution Mass Spectrometry to Examine Histone Post-Translational Modifications and Histone Variants in Caenorhabditis elegans Issue Information
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