Steven J Marygold, Helen Attrill, Elena Speretta, Kate Warner, Michele Magrane, Maria Berloco, Sue Cotterill, Mitch McVey, Yikang Rong, Masamitsu Yamaguchi
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引用次数: 0
摘要
DNA在复制或修复过程中的合成是一个基本的细胞过程,由一组进化保守的聚合酶催化。尽管有大量的研究,黑胃果蝇的DNA聚合酶尚未被系统地审查,导致其命名法不一致,其功能(基因本体,GO)注释的缺陷以及对其表征程度的低估。本文采用在其他物种中广泛使用的命名法,对黑腹龙胆的DNA聚合酶进行了完整的描述,并对其功能注释进行了改进。共有19个基因编码这些蛋白质,包括3个复制聚合酶(α -引物酶,delta, epsilon), 5个翻译/修复聚合酶(zeta, eta, iota, Rev1, theta)和线粒体聚合酶(gamma)。我们也提供了这些因素的生化和遗传特征的概述黑腹龙葵。这项工作,连同将改进的命名法和GO注释纳入关键的生物数据库,包括FlyBase和UniProtKB,将极大地促进对这些重要蛋白质信息的获取。
DNA synthesis during replication or repair is a fundamental cellular process that is catalyzed by a set of evolutionary conserved polymerases. Despite a large body of research, the DNA polymerases of Drosophila melanogaster have not yet been systematically reviewed, leading to inconsistencies in their nomenclature, shortcomings in their functional (Gene Ontology, GO) annotations and an under-appreciation of the extent of their characterization. Here, we describe the complete set of DNA polymerases in D. melanogaster, applying nomenclature already in widespread use in other species, and improving their functional annotation. A total of 19 genes encode the proteins comprising three replicative polymerases (alpha-primase, delta, epsilon), five translesion/repair polymerases (zeta, eta, iota, Rev1, theta) and the mitochondrial polymerase (gamma). We also provide an overview of the biochemical and genetic characterization of these factors in D. melanogaster. This work, together with the incorporation of the improved nomenclature and GO annotation into key biological databases, including FlyBase and UniProtKB, will greatly facilitate access to information about these important proteins.
期刊介绍:
ACS Applied Bio Materials is an interdisciplinary journal publishing original research covering all aspects of biomaterials and biointerfaces including and beyond the traditional biosensing, biomedical and therapeutic applications.
The journal is devoted to reports of new and original experimental and theoretical research of an applied nature that integrates knowledge in the areas of materials, engineering, physics, bioscience, and chemistry into important bio applications. The journal is specifically interested in work that addresses the relationship between structure and function and assesses the stability and degradation of materials under relevant environmental and biological conditions.