基因是如何流动的?利用空间模型和光生物标记识别半水生地衣的潜在传播模式。

IF 2.2 2区 环境科学与生态学 Q1 Agricultural and Biological Sciences BMC Ecology Pub Date : 2020-10-15 DOI:10.1186/s12898-020-00324-4
Jennifer A Doering, Tom Booth, Yolanda F Wiersma, Michele D Piercey-Normore
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引用次数: 4

摘要

背景:景观遗传学是一门跨学科的研究领域,它将群体遗传学的工具和技术与景观生态学的空间明确原则相结合。基因型的空间变异被用来检验关于景观格局如何影响大范围分类群扩散的假设。地衣是分枝生物和光生物之间的共生关系,是一种对其扩散机制知之甚少的实体。本研究的目的是利用空间模型和光生物双孢子虫(Diplosphaera chodatii)的空间变异来推断半水生地衣(Dermatocarpon luridum)的扩散机制。我们对该光生物的ITS rDNA和β-肌动蛋白基因区域进行了测序,绘制了该光生物在Payuk湖的单倍型空间分布图。我们将Payuk湖划分为亚种群,并应用基于地形和水文的四种空间模型来推断其扩散机制。结果:遗传变异与湖泊地形和水体净流量相对应。缺乏距离隔离表明基因在湖中流动或扩散程度高。利用its rDNA和β-肌动蛋白标记,基于光生物的单倍型空间分布,推测其传播机制可能是风和/或水。结论:由于我们的景观假设的相互矛盾的解释,我们推断扩散机制可能是风和/或水分散。这是第一个使用空间模型来推断半水生地衣扩散的研究。本研究的结果可能有助于了解地衣在水生景观中的扩散,这可能对稀有或濒危地衣的保护具有指导意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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How do genes flow? Identifying potential dispersal mode for the semi-aquatic lichen Dermatocarpon luridum using spatial modelling and photobiont markers.

Background: Landscape genetics is an interdisciplinary field that combines tools and techniques from population genetics with the spatially explicit principles from landscape ecology. Spatial variation in genotypes is used to test hypotheses about how landscape pattern affects dispersal in a wide range of taxa. Lichens, symbiotic associations between mycobionts and photobionts, are an entity for which little is known about their dispersal mechanism. Our objective was to infer the dispersal mechanism in the semi-aquatic lichen Dermatocarpon luridum using spatial models and the spatial variation of the photobiont, Diplosphaera chodatii. We sequenced the ITS rDNA and the β-actin gene regions of the photobiont and mapped the haplotype spatial distribution in Payuk Lake. We subdivided Payuk Lake into subpopulations and applied four spatial models based on the topography and hydrology to infer the dispersal mechanism.

Results: Genetic variation corresponded with the topography of the lake and the net flow of water through the waterbody. A lack of isolation-by-distance suggests high gene flow or dispersal within the lake. We infer the dispersal mechanism in D. luridum could either be by wind and/or water based on the haplotype spatial distribution of its photobiont using the ITS rDNA and β-actin markers.

Conclusions: We inferred that the dispersal mechanism could be either wind and/or water dispersed due to the conflicting interpretations of our landscape hypotheses. This is the first study to use spatial modelling to infer dispersal in semi-aquatic lichens. The results of this study may help to understand lichen dispersal within aquatic landscapes, which can have implications in the conservation of rare or threatened lichens.

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来源期刊
BMC Ecology
BMC Ecology ECOLOGY-
CiteScore
5.80
自引率
4.50%
发文量
0
审稿时长
22 weeks
期刊介绍: BMC Ecology is an open access, peer-reviewed journal that considers articles on environmental, behavioral and population ecology as well as biodiversity of plants, animals and microbes.
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