Pub Date : 2020-12-17DOI: 10.1186/s12898-020-00337-z
Bertrand Andriatsitohaina, Daniel Romero-Mujalli, Malcolm S Ramsay, Frederik Kiene, Solofonirina Rasoloharijaona, Romule Rakotondravony, Shawn M Lehman, Ute Radespiel
Background: Edge effects can influence species composition and community structure as a result of changes in microenvironment and edaphic variables. We investigated effects of habitat edges on vegetation structure, abundance and body mass of one vulnerable Microcebus species in northwestern Madagascar. We trapped mouse lemurs along four 1000-m transects (total of 2424 trap nights) that ran perpendicular to the forest edge. We installed 16 pairs of 20 m2 vegetation plots along each transect and measured nine vegetation parameters. To determine the responses of the vegetation and animals to an increasing distance to the edge, we tested the fit of four alternative mathematical functions (linear, power, logistic and unimodal) to the data and derived the depth of edge influence (DEI) for all parameters.
Results: Logistic and unimodal functions best explained edge responses of vegetation parameters, and the logistic function performed best for abundance and body mass of M. ravelobensis. The DEI varied between 50 m (no. of seedlings, no. of liana, dbh of large trees [dbh ≥ 10 cm]) and 460 m (tree height of large trees) for the vegetation parameters, whereas it was 340 m for M. ravelobensis abundance and 390 m for body mass, corresponding best to the DEI of small tree [dbh < 10 cm] density (360 m). Small trees were significantly taller and the density of seedlings was higher in the interior than in the edge habitat. However, there was no significant difference in M. ravelobensis abundance and body mass between interior and edge habitats, suggesting that M. ravelobensis did not show a strong edge response in the study region. Finally, regression analyses revealed three negative (species abundance and three vegetation parameters) and two positive relationships (body mass and two vegetation parameters), suggesting an impact of vegetation structure on M. ravelobensis which may be partly independent of edge effects.
Conclusions: A comparison of our results with previous findings reveals that edge effects are variable in space in a small nocturnal primate from Madagascar. Such an ecological plasticity could be extremely relevant for mitigating species responses to habitat loss and anthropogenic disturbances.
背景:由于微环境和土壤变量的变化,边缘效应会影响物种组成和群落结构。研究了生境边缘对马达加斯加西北部一种小头鼠易危物种的植被结构、丰度和体质量的影响。我们沿着垂直于森林边缘的四条1000米的样带(共2424个陷阱夜)捕获狐猴。我们沿着每个样带安装了16对20平方米的植被样地,并测量了9个植被参数。为了确定植被和动物对增加到边缘距离的响应,我们测试了四种替代数学函数(线性、幂、逻辑和单峰)对数据的拟合,并推导了所有参数的边缘影响深度(DEI)。结果:Logistic函数和单峰函数能很好地解释植被参数的边缘响应,Logistic函数能很好地解释马尾松的丰度和体质量。DEI在50 m (no。对幼苗来说,没有。植被参数中,大树胸径(dbh≥10 cm)和大树树高(460 m)为最优值,而马齿虎的丰度为340 m,体质量为390 m,最符合小树的DEI [dbh]。结论:本研究结果与前人研究结果的比较表明,马达加斯加小型夜间灵长类动物的边缘效应在空间上是不同的。这种生态可塑性可能与减轻物种对栖息地丧失和人为干扰的反应极其相关。
{"title":"Effects of habitat edges on vegetation structure and the vulnerable golden-brown mouse lemur (Microcebus ravelobensis) in northwestern Madagascar.","authors":"Bertrand Andriatsitohaina, Daniel Romero-Mujalli, Malcolm S Ramsay, Frederik Kiene, Solofonirina Rasoloharijaona, Romule Rakotondravony, Shawn M Lehman, Ute Radespiel","doi":"10.1186/s12898-020-00337-z","DOIUrl":"https://doi.org/10.1186/s12898-020-00337-z","url":null,"abstract":"<p><strong>Background: </strong>Edge effects can influence species composition and community structure as a result of changes in microenvironment and edaphic variables. We investigated effects of habitat edges on vegetation structure, abundance and body mass of one vulnerable Microcebus species in northwestern Madagascar. We trapped mouse lemurs along four 1000-m transects (total of 2424 trap nights) that ran perpendicular to the forest edge. We installed 16 pairs of 20 m<sup>2</sup> vegetation plots along each transect and measured nine vegetation parameters. To determine the responses of the vegetation and animals to an increasing distance to the edge, we tested the fit of four alternative mathematical functions (linear, power, logistic and unimodal) to the data and derived the depth of edge influence (DEI) for all parameters.</p><p><strong>Results: </strong>Logistic and unimodal functions best explained edge responses of vegetation parameters, and the logistic function performed best for abundance and body mass of M. ravelobensis. The DEI varied between 50 m (no. of seedlings, no. of liana, dbh of large trees [dbh ≥ 10 cm]) and 460 m (tree height of large trees) for the vegetation parameters, whereas it was 340 m for M. ravelobensis abundance and 390 m for body mass, corresponding best to the DEI of small tree [dbh < 10 cm] density (360 m). Small trees were significantly taller and the density of seedlings was higher in the interior than in the edge habitat. However, there was no significant difference in M. ravelobensis abundance and body mass between interior and edge habitats, suggesting that M. ravelobensis did not show a strong edge response in the study region. Finally, regression analyses revealed three negative (species abundance and three vegetation parameters) and two positive relationships (body mass and two vegetation parameters), suggesting an impact of vegetation structure on M. ravelobensis which may be partly independent of edge effects.</p><p><strong>Conclusions: </strong>A comparison of our results with previous findings reveals that edge effects are variable in space in a small nocturnal primate from Madagascar. Such an ecological plasticity could be extremely relevant for mitigating species responses to habitat loss and anthropogenic disturbances.</p>","PeriodicalId":9232,"journal":{"name":"BMC Ecology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2020-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12898-020-00337-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38725657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-12-17DOI: 10.1186/s12898-020-00338-y
Anna L K Nilsson, Thomas Skaugen, Trond Reitan, Jan Henning L'Abée-Lund, Marlène Gamelon, Kurt Jerstad, Ole Wiggo Røstad, Tore Slagsvold, Nils C Stenseth, L Asbjørn Vøllestad, Bjørn Walseng
Background: Earlier breeding is one of the strongest responses to global change in birds and is a key factor determining reproductive success. In most studies of climate effects, the focus has been on large-scale environmental indices or temperature averaged over large geographical areas, neglecting that animals are affected by the local conditions in their home ranges. In riverine ecosystems, climate change is altering the flow regime, in addition to changes resulting from the increasing demand for renewable and clean hydropower. Together with increasing temperatures, this can lead to shifts in the time window available for successful breeding of birds associated with the riverine habitat. Here, we investigated specifically how the environmental conditions at the territory level influence timing of breeding in a passerine bird with an aquatic lifestyle, the white-throated dipper Cinclus cinclus. We relate daily river discharge and other important hydrological parameters, to a long-term dataset of breeding phenology (1978-2015) in a natural river system.
Results: Dippers bred earlier when winter river discharge and groundwater levels in the weeks prior to breeding were high, and when there was little snow in the catchment area. Breeding was also earlier at lower altitudes, although the effect dramatically declined over the period. This suggests that territories at higher altitudes had more open water in winter later in the study period, which permitted early breeding also here. Unexpectedly, the largest effect inducing earlier breeding time was territory river discharge during the winter months and not immediately prior to breeding. The territory river discharge also increased during the study period.
Conclusions: The observed earlier breeding can thus be interpreted as a response to climate change. Measuring environmental variation at the scale of the territory thus provides detailed information about the interactions between organisms and the abiotic environment.
{"title":"Hydrology influences breeding time in the white-throated dipper.","authors":"Anna L K Nilsson, Thomas Skaugen, Trond Reitan, Jan Henning L'Abée-Lund, Marlène Gamelon, Kurt Jerstad, Ole Wiggo Røstad, Tore Slagsvold, Nils C Stenseth, L Asbjørn Vøllestad, Bjørn Walseng","doi":"10.1186/s12898-020-00338-y","DOIUrl":"10.1186/s12898-020-00338-y","url":null,"abstract":"<p><strong>Background: </strong>Earlier breeding is one of the strongest responses to global change in birds and is a key factor determining reproductive success. In most studies of climate effects, the focus has been on large-scale environmental indices or temperature averaged over large geographical areas, neglecting that animals are affected by the local conditions in their home ranges. In riverine ecosystems, climate change is altering the flow regime, in addition to changes resulting from the increasing demand for renewable and clean hydropower. Together with increasing temperatures, this can lead to shifts in the time window available for successful breeding of birds associated with the riverine habitat. Here, we investigated specifically how the environmental conditions at the territory level influence timing of breeding in a passerine bird with an aquatic lifestyle, the white-throated dipper Cinclus cinclus. We relate daily river discharge and other important hydrological parameters, to a long-term dataset of breeding phenology (1978-2015) in a natural river system.</p><p><strong>Results: </strong>Dippers bred earlier when winter river discharge and groundwater levels in the weeks prior to breeding were high, and when there was little snow in the catchment area. Breeding was also earlier at lower altitudes, although the effect dramatically declined over the period. This suggests that territories at higher altitudes had more open water in winter later in the study period, which permitted early breeding also here. Unexpectedly, the largest effect inducing earlier breeding time was territory river discharge during the winter months and not immediately prior to breeding. The territory river discharge also increased during the study period.</p><p><strong>Conclusions: </strong>The observed earlier breeding can thus be interpreted as a response to climate change. Measuring environmental variation at the scale of the territory thus provides detailed information about the interactions between organisms and the abiotic environment.</p>","PeriodicalId":9232,"journal":{"name":"BMC Ecology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2020-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7745505/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38723087","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-12-11DOI: 10.1186/s12898-020-00336-0
Takaaki Suzuki, Tohru Ikeda
Background: The raccoon (Procyon lotor) is an invasive, non-native species in Japan. Throughout the country, it causes significant agricultural damage and negatively affects native biodiversity. Most of the responsibility for raccoon management lies with local government, and there are still many challenges to be overcome. Although raccoon populations have not been eradicated, intensive control campaigns such as focus on the early stages of invasion have controlled raccoons in some regions. To improve the national management of raccoons, we conducted a survey on raccoon management systems in local government departments considered to solve the challenges recognized in many areas. During 2014 and 2015, we surveyed three different municipal departments about raccoon management measures. The semi-structured interview survey covered two topics: (1) the situation leading up to the current management system; (2) the current management system.
Results: Our results describe the scope and methods used in raccoon management. The government staff managed raccoons using monitoring, employing a variety of methods, a range of budgets, and various role divisions. The management practices are similar in that they share a sense of taking precautions, collaborating with stakeholders, understanding that adequate methods must be used, and obtaining support from experts.
Conclusions: Our case studies reveal the challenges in raccoon management faced by local government officers in regions with active control. The management systems and methods that we surveyed seemed to be effective in solving problems in both developed and undeveloped areas.
{"title":"Invasive raccoon management systems and challenges in regions with active control.","authors":"Takaaki Suzuki, Tohru Ikeda","doi":"10.1186/s12898-020-00336-0","DOIUrl":"10.1186/s12898-020-00336-0","url":null,"abstract":"<p><strong>Background: </strong>The raccoon (Procyon lotor) is an invasive, non-native species in Japan. Throughout the country, it causes significant agricultural damage and negatively affects native biodiversity. Most of the responsibility for raccoon management lies with local government, and there are still many challenges to be overcome. Although raccoon populations have not been eradicated, intensive control campaigns such as focus on the early stages of invasion have controlled raccoons in some regions. To improve the national management of raccoons, we conducted a survey on raccoon management systems in local government departments considered to solve the challenges recognized in many areas. During 2014 and 2015, we surveyed three different municipal departments about raccoon management measures. The semi-structured interview survey covered two topics: (1) the situation leading up to the current management system; (2) the current management system.</p><p><strong>Results: </strong>Our results describe the scope and methods used in raccoon management. The government staff managed raccoons using monitoring, employing a variety of methods, a range of budgets, and various role divisions. The management practices are similar in that they share a sense of taking precautions, collaborating with stakeholders, understanding that adequate methods must be used, and obtaining support from experts.</p><p><strong>Conclusions: </strong>Our case studies reveal the challenges in raccoon management faced by local government officers in regions with active control. The management systems and methods that we surveyed seemed to be effective in solving problems in both developed and undeveloped areas.</p>","PeriodicalId":9232,"journal":{"name":"BMC Ecology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2020-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7731736/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38363869","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-12-09DOI: 10.1186/s12898-020-00332-4
Yaowu Tian, Dong Qiao, Shaojun Xu, Ning Wang
Background: Soil and microbial biomass stoichiometry plays an important role in understanding nutrient cycling in terrestrial ecosystems. However, studies on soil and microbial biomass stoichiometry in forests are rare. This study investigated the effect of tree species and topographic factors on the ecological stoichiometry of soil and soil microbial biomass.
Methods: Three types of forest stands (Quercus variabilis, Larix principis-ruprechtii, and Cotinus coggygria Scop.) in the Beiru River basin of Funiu Mountain were analyzed in September 2018. Six slope positions (sunny bottom slope, sunny middle slope, sunny top slope, shady bottom slope, shady middle slope, and shady top slope) were selected, and the total number of sampling plots was 108. The stoichiometric indices of soil and microbial biomass were determined.
Results: At a depth of 0-10 cm, the soil organic C contents in different stands followed the order of C. coggygria (27.7 ± 5.2 g/kg) > Q. variabilis (24.5 ± 4.9 g/kg) > L. principis-ruprechtii (20.8 ± 4.3 g/kg) (P < 0.05). The soil organic C contents at depths of 0-10 cm with different slope aspects and at different slope positions also showed significant differences (P < 0.05). The highest MBC content was observed at the slope bottom (1002 ± 157 mg/kg), whereas the lowest was observed at the slope top (641 ± 98.3 mg/kg). Redundancy analysis showed that the contribution of tree species to these differences was 57.1%, whereas that of topographical factors was 36.2%.
Conclusions: Tree species more significantly affected soil nutrients and microbial biomass C, N and P than did topographic factors.
背景:土壤和微生物生物量的化学计量对了解陆地生态系统的养分循环起着重要作用。然而,有关森林中土壤和微生物生物量生物力学的研究却很少见。本研究调查了树种和地形因素对土壤和土壤微生物生物量生态平衡的影响:2018年9月,分析了伏牛山北汝河流域的三种林分(Quercus variabilis、Larix principis-ruprechtii和Cotinus coggygria Scop.)。选取了6个坡位(阳坡底、阳坡中、阳坡顶、阴坡底、阴坡中、阴坡顶),采样小区总数为108个。测定了土壤和微生物生物量的化学计量指数:结果:在 0-10 厘米深度,不同树种的土壤有机碳含量依次为 C. coggygria(27.7 ± 5.2 g/kg)> Q. variabilis(24.5 ± 4.9 g/kg)> L. principis-ruprechtii(20.8 ± 4.3 g/kg)(P 结论):与地形因素相比,树种对土壤养分和微生物生物量 C、N 和 P 的影响更大。
{"title":"Effects of tree species and topography on soil and microbial biomass stoichiometry in Funiu Mountain, China.","authors":"Yaowu Tian, Dong Qiao, Shaojun Xu, Ning Wang","doi":"10.1186/s12898-020-00332-4","DOIUrl":"10.1186/s12898-020-00332-4","url":null,"abstract":"<p><strong>Background: </strong>Soil and microbial biomass stoichiometry plays an important role in understanding nutrient cycling in terrestrial ecosystems. However, studies on soil and microbial biomass stoichiometry in forests are rare. This study investigated the effect of tree species and topographic factors on the ecological stoichiometry of soil and soil microbial biomass.</p><p><strong>Methods: </strong>Three types of forest stands (Quercus variabilis, Larix principis-ruprechtii, and Cotinus coggygria Scop.) in the Beiru River basin of Funiu Mountain were analyzed in September 2018. Six slope positions (sunny bottom slope, sunny middle slope, sunny top slope, shady bottom slope, shady middle slope, and shady top slope) were selected, and the total number of sampling plots was 108. The stoichiometric indices of soil and microbial biomass were determined.</p><p><strong>Results: </strong>At a depth of 0-10 cm, the soil organic C contents in different stands followed the order of C. coggygria (27.7 ± 5.2 g/kg) > Q. variabilis (24.5 ± 4.9 g/kg) > L. principis-ruprechtii (20.8 ± 4.3 g/kg) (P < 0.05). The soil organic C contents at depths of 0-10 cm with different slope aspects and at different slope positions also showed significant differences (P < 0.05). The highest MBC content was observed at the slope bottom (1002 ± 157 mg/kg), whereas the lowest was observed at the slope top (641 ± 98.3 mg/kg). Redundancy analysis showed that the contribution of tree species to these differences was 57.1%, whereas that of topographical factors was 36.2%.</p><p><strong>Conclusions: </strong>Tree species more significantly affected soil nutrients and microbial biomass C, N and P than did topographic factors.</p>","PeriodicalId":9232,"journal":{"name":"BMC Ecology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2020-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7726870/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38354918","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-11-30DOI: 10.1186/s12898-020-00335-1
Marcellin C Cokola, Yannick Mugumaarhahama, Grégoire Noël, Espoir B Bisimwa, David M Bugeme, Géant B Chuma, Adrien B Ndeko, Frédéric Francis
Background: The fall Armyworm (FAW) Spodoptera frugiperda (JE Smith), is currently a devastating pest throughout the world due to its dispersal capacity and voracious feeding behaviour on several crops. A MaxEnt species distributions model (SDM) was developed based on collected FAW occurrence and environmental data's. Bioclimatic zones were identified and the potential distribution of FAW in South Kivu, eastern DR Congo, was predicted.
Results: Mean annual temperature (bio1), annual rainfall (bio12), temperature seasonality (bio4) and longest dry season duration (llds) mainly affected the FAW potential distribution. The average area under the curve value of the model was 0.827 demonstrating the model efficient accuracy. According to Jackknife test of variable importance, the annual rainfall was found to correspond to the highest gain when used in isolation. FAWs' suitable areas where this pest is likely to be present in South Kivu province are divided into two corridors. The Eastern corridor covering the Eastern areas of Kalehe, Kabare, Walungu, Uvira and Fizi territories and the Western corridor covering the Western areas of Kalehe, Kabare, Walungu and Mwenga.
Conclusions: This research provides important information on the distribution of FAW and bioclimatic zones in South Kivu. Given the rapid spread of the insect and the climatic variability observed in the region that favor its development and dispersal, it would be planned in the future to develop a monitoring system and effective management strategies to limit it spread and crop damage.
{"title":"Bioclimatic zonation and potential distribution of Spodoptera frugiperda (Lepidoptera: Noctuidae) in South Kivu Province, DR Congo.","authors":"Marcellin C Cokola, Yannick Mugumaarhahama, Grégoire Noël, Espoir B Bisimwa, David M Bugeme, Géant B Chuma, Adrien B Ndeko, Frédéric Francis","doi":"10.1186/s12898-020-00335-1","DOIUrl":"10.1186/s12898-020-00335-1","url":null,"abstract":"<p><strong>Background: </strong>The fall Armyworm (FAW) Spodoptera frugiperda (JE Smith), is currently a devastating pest throughout the world due to its dispersal capacity and voracious feeding behaviour on several crops. A MaxEnt species distributions model (SDM) was developed based on collected FAW occurrence and environmental data's. Bioclimatic zones were identified and the potential distribution of FAW in South Kivu, eastern DR Congo, was predicted.</p><p><strong>Results: </strong>Mean annual temperature (bio1), annual rainfall (bio12), temperature seasonality (bio4) and longest dry season duration (llds) mainly affected the FAW potential distribution. The average area under the curve value of the model was 0.827 demonstrating the model efficient accuracy. According to Jackknife test of variable importance, the annual rainfall was found to correspond to the highest gain when used in isolation. FAWs' suitable areas where this pest is likely to be present in South Kivu province are divided into two corridors. The Eastern corridor covering the Eastern areas of Kalehe, Kabare, Walungu, Uvira and Fizi territories and the Western corridor covering the Western areas of Kalehe, Kabare, Walungu and Mwenga.</p><p><strong>Conclusions: </strong>This research provides important information on the distribution of FAW and bioclimatic zones in South Kivu. Given the rapid spread of the insect and the climatic variability observed in the region that favor its development and dispersal, it would be planned in the future to develop a monitoring system and effective management strategies to limit it spread and crop damage.</p>","PeriodicalId":9232,"journal":{"name":"BMC Ecology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2020-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7708243/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38668171","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-11-27DOI: 10.1186/s12898-020-00331-5
Shuntaro Watanabe, Kazuaki Sumi, Takeshi Ise
Background: Classifying and mapping vegetation are crucial tasks in environmental science and natural resource management. However, these tasks are difficult because conventional methods such as field surveys are highly labor-intensive. Identification of target objects from visual data using computer techniques is one of the most promising techniques to reduce the costs and labor for vegetation mapping. Although deep learning and convolutional neural networks (CNNs) have become a new solution for image recognition and classification recently, in general, detection of ambiguous objects such as vegetation is still difficult. In this study, we investigated the effectiveness of adopting the chopped picture method, a recently described protocol for CNNs, and evaluated the efficiency of CNN for plant community detection from Google Earth images.
Results: We selected bamboo forests as the target and obtained Google Earth images from three regions in Japan. By applying CNN, the best trained model correctly detected over 90% of the targets. Our results showed that the identification accuracy of CNN is higher than that of conventional machine learning methods.
Conclusions: Our results demonstrated that CNN and the chopped picture method are potentially powerful tools for high-accuracy automated detection and mapping of vegetation.
{"title":"Identifying the vegetation type in Google Earth images using a convolutional neural network: a case study for Japanese bamboo forests.","authors":"Shuntaro Watanabe, Kazuaki Sumi, Takeshi Ise","doi":"10.1186/s12898-020-00331-5","DOIUrl":"https://doi.org/10.1186/s12898-020-00331-5","url":null,"abstract":"<p><strong>Background: </strong>Classifying and mapping vegetation are crucial tasks in environmental science and natural resource management. However, these tasks are difficult because conventional methods such as field surveys are highly labor-intensive. Identification of target objects from visual data using computer techniques is one of the most promising techniques to reduce the costs and labor for vegetation mapping. Although deep learning and convolutional neural networks (CNNs) have become a new solution for image recognition and classification recently, in general, detection of ambiguous objects such as vegetation is still difficult. In this study, we investigated the effectiveness of adopting the chopped picture method, a recently described protocol for CNNs, and evaluated the efficiency of CNN for plant community detection from Google Earth images.</p><p><strong>Results: </strong>We selected bamboo forests as the target and obtained Google Earth images from three regions in Japan. By applying CNN, the best trained model correctly detected over 90% of the targets. Our results showed that the identification accuracy of CNN is higher than that of conventional machine learning methods.</p><p><strong>Conclusions: </strong>Our results demonstrated that CNN and the chopped picture method are potentially powerful tools for high-accuracy automated detection and mapping of vegetation.</p>","PeriodicalId":9232,"journal":{"name":"BMC Ecology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2020-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12898-020-00331-5","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38650341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-11-24DOI: 10.1186/s12898-020-00334-2
Ayoub Hallouti, Mohamed Ait Hamza, Abdelaziz Zahidi, Rachid Ait Hammou, Rachid Bouharroud, Abdellah Ait Ben Aoumar, Hassan Boubaker
Background: Studying the ecology of biocontrol-agents is a prerequisite to effectively control medfly (Ceratitis capitata (Diptera: Tephritidae)) with entomopathogenic fungi. In this context, factors affecting the occurrence and distribution of medfly-associated entomopathogenic-fungi were studied. Soil samples (22) were collected from natural and cultivated areas of Souss-region Morocco.
Results: A total of 260 fungal isolates belonging to 22 species and 10 genera were obtained by using medfly pupae as bait. Medfly-associated fungi were detected in all studied soils and pupae infection percentages ranged from 3.33% to 48%. Two genera, Fusarium and Beauveria were the most frequent with 83 isolates (32%) and 50 isolates (19.23%) respectively. Pathogenicity test of isolated species against medfly pupae showed high mortality rates up to 91% for some strains. Principal component analysis (PCA) demonstrated a strong influence of origin, physical, and chemical properties of soil on the abundance of these fungi. In general, medfly-associated fungi were more abundant in soils with moderate pH (7.5 to 8) having high sand and organic content. High relative humidity negatively influenced the abundance of these fungi. Both factors directly affected the fungal infection percentages in pupae. The response of fungi to these parameters varied among species. According to principal component analysis (PCA), the soils of argan fields and forests were more suitable for the development of medfly-associated fungi than citrus orchards.
Conclusions: These results guide identifying suitable soils for the effective application of entomopathogenic fungi as biological control agents. In summary, isolated indigenous strains seem to be a promising option to control C. capitata.
{"title":"Diversity of entomopathogenic fungi associated with Mediterranean fruit fly (Ceratitis capitata (Diptera: Tephritidae)) in Moroccan Argan forests and nearby area: impact of soil factors on their distribution.","authors":"Ayoub Hallouti, Mohamed Ait Hamza, Abdelaziz Zahidi, Rachid Ait Hammou, Rachid Bouharroud, Abdellah Ait Ben Aoumar, Hassan Boubaker","doi":"10.1186/s12898-020-00334-2","DOIUrl":"10.1186/s12898-020-00334-2","url":null,"abstract":"<p><strong>Background: </strong>Studying the ecology of biocontrol-agents is a prerequisite to effectively control medfly (Ceratitis capitata (Diptera: Tephritidae)) with entomopathogenic fungi. In this context, factors affecting the occurrence and distribution of medfly-associated entomopathogenic-fungi were studied. Soil samples (22) were collected from natural and cultivated areas of Souss-region Morocco.</p><p><strong>Results: </strong>A total of 260 fungal isolates belonging to 22 species and 10 genera were obtained by using medfly pupae as bait. Medfly-associated fungi were detected in all studied soils and pupae infection percentages ranged from 3.33% to 48%. Two genera, Fusarium and Beauveria were the most frequent with 83 isolates (32%) and 50 isolates (19.23%) respectively. Pathogenicity test of isolated species against medfly pupae showed high mortality rates up to 91% for some strains. Principal component analysis (PCA) demonstrated a strong influence of origin, physical, and chemical properties of soil on the abundance of these fungi. In general, medfly-associated fungi were more abundant in soils with moderate pH (7.5 to 8) having high sand and organic content. High relative humidity negatively influenced the abundance of these fungi. Both factors directly affected the fungal infection percentages in pupae. The response of fungi to these parameters varied among species. According to principal component analysis (PCA), the soils of argan fields and forests were more suitable for the development of medfly-associated fungi than citrus orchards.</p><p><strong>Conclusions: </strong>These results guide identifying suitable soils for the effective application of entomopathogenic fungi as biological control agents. In summary, isolated indigenous strains seem to be a promising option to control C. capitata.</p>","PeriodicalId":9232,"journal":{"name":"BMC Ecology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2020-11-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7684748/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38638204","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-11-24DOI: 10.1186/s12898-020-00333-3
Claudia Colesie, Zsofia Reka Stangl, Vaughan Hurry
Background: Fast growing invasive alien species are highly efficient with little investment in their tissues. They often outcompete slower growing species with severe consequences for diversity and community composition. The plant economics trait-based approach provides a theoretical framework, allowing the classification of plants with different performance characteristics. However, in multifaceted background, this approach needs testing. The evaluation and prediction of plant performance outcomes in ecologically relevant settings is among the most pressing topics to understand and predict ecosystem functioning, especially in a quickly changing environment. Temperature and nutrient availability are major components of the global environmental change and this study examines the response of growth economic traits, photosynthesis and respiration to such changes for an invasive fast-growing (Bromus hordaceus) and a slow-growing perennial (Bromus erectus) grass species.
Results: The fully controlled growth chamber experiment simulated temperature-and changes in nitrogen availability individually and in combination. We therefore provide maximum control and monitoring of growth responses allowing general growth trait response patterns to be tested. Under optimal nitrogen availability the slow growing B. erectus was better able to handle the lower temperatures (7 °C) whilst both species had problems at higher temperatures (30 °C). Stresses produced by a combination of heat and nutrient availability were identified to be less limiting for the slow growing species but the combination of chilling with low nutrient availability was most detrimental to both species.
Conclusions: For the fast-growing invader B. hordeaceus a reduction of nitrogen availability in combination with a temperature increase, leads to limited growth performance in comparison to the slow-growing perennial species B.erectus and this may explain why nutrient-rich habitats often experience more invasion than resource-poor habitats.
{"title":"Differences in growth-economics of fast vs. slow growing grass species in response to temperature and nitrogen limitation individually, and in combination.","authors":"Claudia Colesie, Zsofia Reka Stangl, Vaughan Hurry","doi":"10.1186/s12898-020-00333-3","DOIUrl":"https://doi.org/10.1186/s12898-020-00333-3","url":null,"abstract":"<p><strong>Background: </strong>Fast growing invasive alien species are highly efficient with little investment in their tissues. They often outcompete slower growing species with severe consequences for diversity and community composition. The plant economics trait-based approach provides a theoretical framework, allowing the classification of plants with different performance characteristics. However, in multifaceted background, this approach needs testing. The evaluation and prediction of plant performance outcomes in ecologically relevant settings is among the most pressing topics to understand and predict ecosystem functioning, especially in a quickly changing environment. Temperature and nutrient availability are major components of the global environmental change and this study examines the response of growth economic traits, photosynthesis and respiration to such changes for an invasive fast-growing (Bromus hordaceus) and a slow-growing perennial (Bromus erectus) grass species.</p><p><strong>Results: </strong>The fully controlled growth chamber experiment simulated temperature-and changes in nitrogen availability individually and in combination. We therefore provide maximum control and monitoring of growth responses allowing general growth trait response patterns to be tested. Under optimal nitrogen availability the slow growing B. erectus was better able to handle the lower temperatures (7 °C) whilst both species had problems at higher temperatures (30 °C). Stresses produced by a combination of heat and nutrient availability were identified to be less limiting for the slow growing species but the combination of chilling with low nutrient availability was most detrimental to both species.</p><p><strong>Conclusions: </strong>For the fast-growing invader B. hordeaceus a reduction of nitrogen availability in combination with a temperature increase, leads to limited growth performance in comparison to the slow-growing perennial species B.erectus and this may explain why nutrient-rich habitats often experience more invasion than resource-poor habitats.</p>","PeriodicalId":9232,"journal":{"name":"BMC Ecology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2020-11-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12898-020-00333-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38638967","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-11-23DOI: 10.1186/s12898-020-00330-6
Sigrid Hoyer-Fender
Background: The Drosophila melanogaster mutant white-mottled is a well-established model for position-effect variegation (PEV). Transposition of the euchromatic white gene into the vicinity of the pericentric heterochromatin caused variegated expression of white due to heterochromatin spreading. The establishment of the euchromatin-heterochromatin boundary and spreading of silencing is regulated by mutually exclusive histone modifications, i.e. the methylations of histone H3 at lysine 9 and lysine 4. Demethylation of H3K4, catalysed by lysine-specific demethylase LSD1, is required for subsequent methylation of H3K9 to establish heterochromatin. LSD1 is therefore essential for heterochromatin formation and spreading. We asked whether drug-mediated inhibition of LSD affects the expression of white and if this induced change can be transmitted to those generations that have never been exposed to the triggering signal, i.e. transgenerational epigenetic inheritance.
Results: We used the lysine-specific demethylase 1 (LSD1)-inhibitor Tranylcypromine to investigate its effect on eye colour expression in consecutive generations by feeding the parental and F1 generations of the Drosophila melanogaster mutant white-mottled. Quantitative Western blotting revealed that Tranylcypromine inhibits H3K4-demethylation both in vitro in S2 cells as well as in embryos when used as feeding additive. Eye colour expression in male flies was determined by optical measurement of pigment extracts and qRT-PCR of white gene expression. Flies raised in the presence of Tranylcypromine and its solvent DMSO showed increased eye pigment expression. Beyond that, eye pigment expression was also affected in consecutive generations including F3, which is the first generation without contact with the inhibitor.
Conclusions: Our results show that feeding of Tranylcypromine and DMSO caused desilencing of white in treated flies of generation F1. Consecutive generations, raised on standard food without further supplements, are also affected by the drug-induced alteration of histone modifications. Although eye pigment expression eventually returned to the basal state, the observed long-lasting effect points to a memory capacity of previous epigenomes. Furthermore, our results indicate that food compounds potentially affect chromatin modification and hence gene expression and that the alteration is putatively inherited not only parentally but transgenerationally.
{"title":"Transgenerational effect of drug-mediated inhibition of LSD1 on eye pigment expression in Drosophila.","authors":"Sigrid Hoyer-Fender","doi":"10.1186/s12898-020-00330-6","DOIUrl":"https://doi.org/10.1186/s12898-020-00330-6","url":null,"abstract":"<p><strong>Background: </strong>The Drosophila melanogaster mutant white-mottled is a well-established model for position-effect variegation (PEV). Transposition of the euchromatic white gene into the vicinity of the pericentric heterochromatin caused variegated expression of white due to heterochromatin spreading. The establishment of the euchromatin-heterochromatin boundary and spreading of silencing is regulated by mutually exclusive histone modifications, i.e. the methylations of histone H3 at lysine 9 and lysine 4. Demethylation of H3K4, catalysed by lysine-specific demethylase LSD1, is required for subsequent methylation of H3K9 to establish heterochromatin. LSD1 is therefore essential for heterochromatin formation and spreading. We asked whether drug-mediated inhibition of LSD affects the expression of white and if this induced change can be transmitted to those generations that have never been exposed to the triggering signal, i.e. transgenerational epigenetic inheritance.</p><p><strong>Results: </strong>We used the lysine-specific demethylase 1 (LSD1)-inhibitor Tranylcypromine to investigate its effect on eye colour expression in consecutive generations by feeding the parental and F1 generations of the Drosophila melanogaster mutant white-mottled. Quantitative Western blotting revealed that Tranylcypromine inhibits H3K4-demethylation both in vitro in S2 cells as well as in embryos when used as feeding additive. Eye colour expression in male flies was determined by optical measurement of pigment extracts and qRT-PCR of white gene expression. Flies raised in the presence of Tranylcypromine and its solvent DMSO showed increased eye pigment expression. Beyond that, eye pigment expression was also affected in consecutive generations including F3, which is the first generation without contact with the inhibitor.</p><p><strong>Conclusions: </strong>Our results show that feeding of Tranylcypromine and DMSO caused desilencing of white in treated flies of generation F1. Consecutive generations, raised on standard food without further supplements, are also affected by the drug-induced alteration of histone modifications. Although eye pigment expression eventually returned to the basal state, the observed long-lasting effect points to a memory capacity of previous epigenomes. Furthermore, our results indicate that food compounds potentially affect chromatin modification and hence gene expression and that the alteration is putatively inherited not only parentally but transgenerationally.</p>","PeriodicalId":9232,"journal":{"name":"BMC Ecology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2020-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12898-020-00330-6","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38644662","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-11-23DOI: 10.1186/s12898-020-00329-z
Zahra Alsaffar, João Cúrdia, Xabier Irigoien, Susana Carvalho
Background: Tropical habitats and their associated environmental characteristics play a critical role in shaping macroinvertebrate communities. Assessing patterns of diversity over space and time and investigating the factors that control and generate those patterns is critical for conservation efforts. However, these factors are still poorly understood in sub-tropical and tropical regions. The present study applied a combination of uni- and multivariate techniques to test whether patterns of biodiversity, composition, and structure of macrobenthic assemblages change across different lagoon habitats (two mangrove sites; two seagrass meadows with varying levels of vegetation cover; and an unvegetated subtidal area) and between seasons and years.
Results: In total, 4771 invertebrates were identified belonging to 272 operational taxonomic units (OTUs). We observed that macrobenthic lagoon assemblages are diverse, heterogeneous and that the most evident biological pattern was spatial rather than temporal. To investigate whether macrofaunal patterns within the lagoon habitats (mangrove, seagrass, unvegetated area) changed through the time, we analysed each habitat separately. The results showed high seasonal and inter-annual variability in the macrofaunal patterns. However, the seagrass beds that are characterized by variable vegetation cover, through time, showed comparatively higher stability (with the lowest values of inter-annual variability and a high number of resident taxa). These results support the theory that seagrass habitat complexity promotes diversity and density of macrobenthic assemblages. Despite the structural and functional importance of seagrass beds documented in this study, the results also highlighted the small-scale heterogeneity of tropical habitats that may serve as biodiversity repositories.
Conclusions: Comprehensive approaches at the "seascape" level are required for improved ecosystem management and to maintain connectivity patterns amongst habitats. This is particularly true along the Saudi Arabian coast of the Red Sea, which is currently experiencing rapid coastal development. Also, considering the high temporal variability (seasonal and inter-annual) of tropical shallow-water habitats, monitoring and management plans must include temporal scales.
{"title":"Composition, uniqueness and connectivity across tropical coastal lagoon habitats in the Red Sea.","authors":"Zahra Alsaffar, João Cúrdia, Xabier Irigoien, Susana Carvalho","doi":"10.1186/s12898-020-00329-z","DOIUrl":"https://doi.org/10.1186/s12898-020-00329-z","url":null,"abstract":"<p><strong>Background: </strong>Tropical habitats and their associated environmental characteristics play a critical role in shaping macroinvertebrate communities. Assessing patterns of diversity over space and time and investigating the factors that control and generate those patterns is critical for conservation efforts. However, these factors are still poorly understood in sub-tropical and tropical regions. The present study applied a combination of uni- and multivariate techniques to test whether patterns of biodiversity, composition, and structure of macrobenthic assemblages change across different lagoon habitats (two mangrove sites; two seagrass meadows with varying levels of vegetation cover; and an unvegetated subtidal area) and between seasons and years.</p><p><strong>Results: </strong>In total, 4771 invertebrates were identified belonging to 272 operational taxonomic units (OTUs). We observed that macrobenthic lagoon assemblages are diverse, heterogeneous and that the most evident biological pattern was spatial rather than temporal. To investigate whether macrofaunal patterns within the lagoon habitats (mangrove, seagrass, unvegetated area) changed through the time, we analysed each habitat separately. The results showed high seasonal and inter-annual variability in the macrofaunal patterns. However, the seagrass beds that are characterized by variable vegetation cover, through time, showed comparatively higher stability (with the lowest values of inter-annual variability and a high number of resident taxa). These results support the theory that seagrass habitat complexity promotes diversity and density of macrobenthic assemblages. Despite the structural and functional importance of seagrass beds documented in this study, the results also highlighted the small-scale heterogeneity of tropical habitats that may serve as biodiversity repositories.</p><p><strong>Conclusions: </strong>Comprehensive approaches at the \"seascape\" level are required for improved ecosystem management and to maintain connectivity patterns amongst habitats. This is particularly true along the Saudi Arabian coast of the Red Sea, which is currently experiencing rapid coastal development. Also, considering the high temporal variability (seasonal and inter-annual) of tropical shallow-water habitats, monitoring and management plans must include temporal scales.</p>","PeriodicalId":9232,"journal":{"name":"BMC Ecology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2020-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12898-020-00329-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38729871","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}