{"title":"Dacrymycetes 的系统发育和特征演化,以及 Unilacrymaceae 和 Dacryonaemataceae fam.","authors":"J C Zamora, S Ekman","doi":"10.3767/persoonia.2020.44.07","DOIUrl":null,"url":null,"abstract":"<p><p>We present a multilocus phylogeny of the class <i>Dacrymycetes</i>, based on data from the 18S, ITS, 28S, <i>RPB1</i>, <i>RPB2</i>, <i>TEF-1α</i>, 12S, and <i>ATP6</i> DNA regions, with c. 90 species including the types of most currently accepted genera. A variety of methodological approaches was used to infer phylogenetic relationships among the <i>Dacrymycetes</i>, from a supermatrix strategy using maximum likelihood and Bayesian inference on a concatenated dataset, to coalescence-based calculations, such as quartet-based summary methods of independent single-locus trees, and Bayesian integration of single-locus trees into a species tree under the multispecies coalescent. We evaluate for the first time the taxonomic usefulness of some cytological phenotypic characters, i.e., vacuolar contents (vacuolar bodies and lipid bodies), number of nuclei of recently discharged basidiospores, and pigments, with especial emphasis on carotenoids. These characters, along with several others traditionally used for the taxonomy of this group (basidium shape, presence and morphology of clamp connections, morphology of the terminal cells of cortical/marginal hyphae, presence and degree of ramification of the hyphidia), are mapped on the resulting phylogenies and their evolution through the class <i>Dacrymycetes</i> discussed. Our analyses reveal five lineages that putatively represent five different families, four of which are accepted and named. Three out of these four lineages correspond to previously circumscribed and published families (<i>Cerinomycetaceae</i>, <i>Dacrymycetaceae</i>, and <i>Unilacrymaceae</i>), and one is proposed as the new family <i>Dacryonaemataceae</i>. Provisionally, only a single order, <i>Dacrymycetales</i>, is accepted within the class. Furthermore, the systematics of the two smallest families, <i>Dacryonaemataceae</i> and <i>Unilacrymaceae</i>, are investigated to the species level, using coalescence-based species delimitation on multilocus DNA data, and a detailed morphological study including morphometric analyses of the basidiospores. Three species are accepted in <i>Dacryonaema</i>, the type, <i>Da. rufum</i>, the newly combined <i>Da. macnabbii</i> (basionym <i>Dacrymyces macnabbii</i>), and a new species named <i>Da. macrosporum</i>. Two species are accepted in <i>Unilacryma</i>, the new <i>U. bispora</i>, and the type, <i>U. unispora</i>, the latter treated in a broad sense pending improved sampling across the Holarctic.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"44 ","pages":"161-205"},"PeriodicalIF":9.5000,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/5d/ea/per-2020-44-7.PMC7567964.pdf","citationCount":"0","resultStr":"{\"title\":\"Phylogeny and character evolution in the <i>Dacrymycetes</i>, and systematics of <i>Unilacrymaceae</i> and <i>Dacryonaemataceae</i> fam. nov.\",\"authors\":\"J C Zamora, S Ekman\",\"doi\":\"10.3767/persoonia.2020.44.07\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>We present a multilocus phylogeny of the class <i>Dacrymycetes</i>, based on data from the 18S, ITS, 28S, <i>RPB1</i>, <i>RPB2</i>, <i>TEF-1α</i>, 12S, and <i>ATP6</i> DNA regions, with c. 90 species including the types of most currently accepted genera. A variety of methodological approaches was used to infer phylogenetic relationships among the <i>Dacrymycetes</i>, from a supermatrix strategy using maximum likelihood and Bayesian inference on a concatenated dataset, to coalescence-based calculations, such as quartet-based summary methods of independent single-locus trees, and Bayesian integration of single-locus trees into a species tree under the multispecies coalescent. We evaluate for the first time the taxonomic usefulness of some cytological phenotypic characters, i.e., vacuolar contents (vacuolar bodies and lipid bodies), number of nuclei of recently discharged basidiospores, and pigments, with especial emphasis on carotenoids. These characters, along with several others traditionally used for the taxonomy of this group (basidium shape, presence and morphology of clamp connections, morphology of the terminal cells of cortical/marginal hyphae, presence and degree of ramification of the hyphidia), are mapped on the resulting phylogenies and their evolution through the class <i>Dacrymycetes</i> discussed. Our analyses reveal five lineages that putatively represent five different families, four of which are accepted and named. Three out of these four lineages correspond to previously circumscribed and published families (<i>Cerinomycetaceae</i>, <i>Dacrymycetaceae</i>, and <i>Unilacrymaceae</i>), and one is proposed as the new family <i>Dacryonaemataceae</i>. Provisionally, only a single order, <i>Dacrymycetales</i>, is accepted within the class. Furthermore, the systematics of the two smallest families, <i>Dacryonaemataceae</i> and <i>Unilacrymaceae</i>, are investigated to the species level, using coalescence-based species delimitation on multilocus DNA data, and a detailed morphological study including morphometric analyses of the basidiospores. Three species are accepted in <i>Dacryonaema</i>, the type, <i>Da. rufum</i>, the newly combined <i>Da. macnabbii</i> (basionym <i>Dacrymyces macnabbii</i>), and a new species named <i>Da. macrosporum</i>. Two species are accepted in <i>Unilacryma</i>, the new <i>U. bispora</i>, and the type, <i>U. unispora</i>, the latter treated in a broad sense pending improved sampling across the Holarctic.</p>\",\"PeriodicalId\":20014,\"journal\":{\"name\":\"Persoonia\",\"volume\":\"44 \",\"pages\":\"161-205\"},\"PeriodicalIF\":9.5000,\"publicationDate\":\"2020-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/5d/ea/per-2020-44-7.PMC7567964.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Persoonia\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.3767/persoonia.2020.44.07\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2020/4/24 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q1\",\"JCRName\":\"MYCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Persoonia","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3767/persoonia.2020.44.07","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2020/4/24 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"MYCOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
我们基于 18S、ITS、28S、RPB1、RPB2、TEF-1α、12S 和 ATP6 DNA 区域的数据,建立了 Dacrymycetes 类的多焦点系统发生,包括目前公认的大多数属的约 90 个物种。我们采用了多种方法来推断Dacrymycetes之间的系统发育关系,包括使用最大似然法和贝叶斯推断法的超级矩阵策略(supermatrix strategy)、基于聚合的计算(如基于独立单焦点树的四元组汇总法)以及在多物种聚合下将单焦点树整合为物种树的贝叶斯法。我们首次评估了一些细胞学表型特征(即空泡内容物(空泡体和脂体)、最近排出的基生孢子的核数目和色素,尤其是类胡萝卜素)在分类学上的作用。这些特征以及传统上用于该类生物分类的其他一些特征(基质的形状、夹子连接的存在和形态、皮层/边缘菌丝末端细胞的形态、菌丝的存在和分枝程度),都被绘制在所得到的系统进化图上,并讨论了它们在 Dacrymycetes 类中的进化过程。我们的分析揭示了可能代表五个不同科的五个系,其中四个系已被接受并命名。在这四个系中,有三个系对应于以前圈定并公布的科(Cerinomycetaceae、Dacrymycetaceae 和 Unilacrymaceae),还有一个系被提议为新科 Dacryonaemataceae。目前,该类中只接受了一个目,即 Dacrymycetales。此外,还对两个最小的科 Dacryonaemataceae 和 Unilacrymaceae 的系统学进行了种级研究,采用基于多焦点 DNA 数据的聚合法进行种的划分,并进行了详细的形态学研究,包括基生孢子的形态计量分析。macnabbii (basionym Dacrymyces macnabbii),以及一个名为 Da.Unilacryma 中的两个种被接受,即新的 U. bispora 和模式标本 U. unispora,后者被广义地对待,以待全北极地区取样的改进。
Phylogeny and character evolution in the Dacrymycetes, and systematics of Unilacrymaceae and Dacryonaemataceae fam. nov.
We present a multilocus phylogeny of the class Dacrymycetes, based on data from the 18S, ITS, 28S, RPB1, RPB2, TEF-1α, 12S, and ATP6 DNA regions, with c. 90 species including the types of most currently accepted genera. A variety of methodological approaches was used to infer phylogenetic relationships among the Dacrymycetes, from a supermatrix strategy using maximum likelihood and Bayesian inference on a concatenated dataset, to coalescence-based calculations, such as quartet-based summary methods of independent single-locus trees, and Bayesian integration of single-locus trees into a species tree under the multispecies coalescent. We evaluate for the first time the taxonomic usefulness of some cytological phenotypic characters, i.e., vacuolar contents (vacuolar bodies and lipid bodies), number of nuclei of recently discharged basidiospores, and pigments, with especial emphasis on carotenoids. These characters, along with several others traditionally used for the taxonomy of this group (basidium shape, presence and morphology of clamp connections, morphology of the terminal cells of cortical/marginal hyphae, presence and degree of ramification of the hyphidia), are mapped on the resulting phylogenies and their evolution through the class Dacrymycetes discussed. Our analyses reveal five lineages that putatively represent five different families, four of which are accepted and named. Three out of these four lineages correspond to previously circumscribed and published families (Cerinomycetaceae, Dacrymycetaceae, and Unilacrymaceae), and one is proposed as the new family Dacryonaemataceae. Provisionally, only a single order, Dacrymycetales, is accepted within the class. Furthermore, the systematics of the two smallest families, Dacryonaemataceae and Unilacrymaceae, are investigated to the species level, using coalescence-based species delimitation on multilocus DNA data, and a detailed morphological study including morphometric analyses of the basidiospores. Three species are accepted in Dacryonaema, the type, Da. rufum, the newly combined Da. macnabbii (basionym Dacrymyces macnabbii), and a new species named Da. macrosporum. Two species are accepted in Unilacryma, the new U. bispora, and the type, U. unispora, the latter treated in a broad sense pending improved sampling across the Holarctic.
期刊介绍:
Persoonia aspires to publish papers focusing on the molecular systematics and evolution of fungi. Additionally, it seeks to advance fungal taxonomy by employing a polythetic approach to elucidate the genuine phylogeny and relationships within the kingdom Fungi. The journal is dedicated to disseminating high-quality papers that unravel both known and novel fungal taxa at the DNA level. Moreover, it endeavors to provide fresh insights into evolutionary processes and relationships. The scope of papers considered encompasses research articles, along with topical and book reviews.