Ting Cao , Ya-Ping Hu , Jia-Rui Yu , Tie-Zheng Wei , Hai-Sheng Yuan
{"title":"中国担子菌科(Cantharellales,担子菌科)新分类群的系统发育综述","authors":"Ting Cao , Ya-Ping Hu , Jia-Rui Yu , Tie-Zheng Wei , Hai-Sheng Yuan","doi":"10.1016/j.simyco.2021.100121","DOIUrl":null,"url":null,"abstract":"<div><p>The family <em>Hydnaceae</em> (<em>Cantharellales</em>, <em>Basidiomycota</em>) is a group of fungi found worldwide which exhibit stichic nuclear division. The group is highly diverse in morphology, ecology, and phylogeny, and includes some edible species which are popular all over the world. Traditionally, <em>Hydnaceae</em> together with <em>Cantharellaceae</em>, <em>Clavulinaceae</em> and <em>Sistotremataceae</em> are four families in the <em>Cantharellales.</em> The four families were combined and redefined as “<em>Hydnaceae</em>”, however, a comprehensive phylogeny based on multiple-marker dataset for the entire <em>Hydnaceae sensu stricto</em> is still lacking and the delimitation is also unclear. We inferred Maximum Likelihood and Bayesian phylogenies for the family <em>Hydnaceae</em> from the data of five DNA regions: the large subunit of nuclear ribosomal RNA gene (nLSU), the internal transcribed spacer regions (ITS), the mitochondrial small subunit rDNA gene (mtSSU), the second largest subunit of RNA polymerase II (<em>RPB2</em>) and the translation elongation factor 1-alpha gene (<em>TEF1</em>). We also produced three more phylogenetic trees for <em>Cantharellus</em> based on 5.8S, nLSU, mtSSU, <em>RPB2</em> and <em>TEF1</em>, <em>Craterellus</em> and <em>Hydnum</em> both based on the combined nLSU and ITS. This study has reproduced the status of <em>Hydnaceae</em> in the order <em>Cantharellales</em>, and phylogenetically confirmed seventeen genera in <em>Hydnaceae.</em> Twenty nine new taxa or synonyms are described, revealed, proposed, or reported, including eight new subgenera (<em>Cantharellus</em> subgenus <em>Magnus</em>, <em>Craterellus</em> subgenus <em>Cariosi</em>, subg. <em>Craterellus</em>, subg. <em>Imperforati</em>, subg. <em>Lamelles</em>, subg. <em>Longibasidiosi</em>, subg. <em>Ovoidei</em>, and <em>Hydnum</em> subgenus <em>Brevispina</em>); seventeen new species (<em>Ca</em>. <em>laevihymeninus</em>, <em>Ca</em>. <em>magnus</em>, <em>Ca</em>. <em>subminor</em>, <em>Cr</em>. <em>badiogriseus</em>, <em>Cr</em>. <em>croceialbus</em>, <em>Cr</em>. <em>macrosporus</em>, <em>Cr</em>. <em>squamatus</em>, <em>H</em>. <em>brevispinum</em>, <em>H</em>. <em>flabellatum</em>, <em>H</em>. <em>flavidocanum</em>, <em>H</em>. <em>longibasidium</em>, <em>H</em>. <em>pallidocroceum</em>, <em>H</em>. <em>pallidomarginatum</em>, <em>H</em>. <em>sphaericum</em>, <em>H</em>. <em>tangerinum</em>, <em>H</em>. <em>tenuistipitum</em> and <em>H</em>. <em>ventricosum</em>); two synonyms (<em>Ca</em>. <em>anzutake</em> and <em>Ca</em>. <em>tuberculosporus</em> as <em>Ca</em>. <em>yunnanensis</em>), and two newly recorded species (<em>H</em>. <em>albomagnum</em> and <em>H</em>. <em>minum</em>). The distinguishing characters of the new species and subgenera as well as their allied taxa are discussed in the notes which follow them. The delimitation and diversity in morphology, ecology, and phylogeny of <em>Hydnaceae</em> is discussed. Notes of seventeen genera which are phylogenetically accepted in <em>Hydnaceae</em> by this study and a key to the genera in <em>Hydnaceae</em> are provided<em>.</em></p></div>","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"99 ","pages":"Article 100121"},"PeriodicalIF":14.1000,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/17/9d/main.PMC8717575.pdf","citationCount":"15","resultStr":"{\"title\":\"A phylogenetic overview of the Hydnaceae (Cantharellales, Basidiomycota) with new taxa from China\",\"authors\":\"Ting Cao , Ya-Ping Hu , Jia-Rui Yu , Tie-Zheng Wei , Hai-Sheng Yuan\",\"doi\":\"10.1016/j.simyco.2021.100121\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The family <em>Hydnaceae</em> (<em>Cantharellales</em>, <em>Basidiomycota</em>) is a group of fungi found worldwide which exhibit stichic nuclear division. The group is highly diverse in morphology, ecology, and phylogeny, and includes some edible species which are popular all over the world. Traditionally, <em>Hydnaceae</em> together with <em>Cantharellaceae</em>, <em>Clavulinaceae</em> and <em>Sistotremataceae</em> are four families in the <em>Cantharellales.</em> The four families were combined and redefined as “<em>Hydnaceae</em>”, however, a comprehensive phylogeny based on multiple-marker dataset for the entire <em>Hydnaceae sensu stricto</em> is still lacking and the delimitation is also unclear. We inferred Maximum Likelihood and Bayesian phylogenies for the family <em>Hydnaceae</em> from the data of five DNA regions: the large subunit of nuclear ribosomal RNA gene (nLSU), the internal transcribed spacer regions (ITS), the mitochondrial small subunit rDNA gene (mtSSU), the second largest subunit of RNA polymerase II (<em>RPB2</em>) and the translation elongation factor 1-alpha gene (<em>TEF1</em>). We also produced three more phylogenetic trees for <em>Cantharellus</em> based on 5.8S, nLSU, mtSSU, <em>RPB2</em> and <em>TEF1</em>, <em>Craterellus</em> and <em>Hydnum</em> both based on the combined nLSU and ITS. This study has reproduced the status of <em>Hydnaceae</em> in the order <em>Cantharellales</em>, and phylogenetically confirmed seventeen genera in <em>Hydnaceae.</em> Twenty nine new taxa or synonyms are described, revealed, proposed, or reported, including eight new subgenera (<em>Cantharellus</em> subgenus <em>Magnus</em>, <em>Craterellus</em> subgenus <em>Cariosi</em>, subg. <em>Craterellus</em>, subg. <em>Imperforati</em>, subg. <em>Lamelles</em>, subg. <em>Longibasidiosi</em>, subg. <em>Ovoidei</em>, and <em>Hydnum</em> subgenus <em>Brevispina</em>); seventeen new species (<em>Ca</em>. <em>laevihymeninus</em>, <em>Ca</em>. <em>magnus</em>, <em>Ca</em>. <em>subminor</em>, <em>Cr</em>. <em>badiogriseus</em>, <em>Cr</em>. <em>croceialbus</em>, <em>Cr</em>. <em>macrosporus</em>, <em>Cr</em>. <em>squamatus</em>, <em>H</em>. <em>brevispinum</em>, <em>H</em>. <em>flabellatum</em>, <em>H</em>. <em>flavidocanum</em>, <em>H</em>. <em>longibasidium</em>, <em>H</em>. <em>pallidocroceum</em>, <em>H</em>. <em>pallidomarginatum</em>, <em>H</em>. <em>sphaericum</em>, <em>H</em>. <em>tangerinum</em>, <em>H</em>. <em>tenuistipitum</em> and <em>H</em>. <em>ventricosum</em>); two synonyms (<em>Ca</em>. <em>anzutake</em> and <em>Ca</em>. <em>tuberculosporus</em> as <em>Ca</em>. <em>yunnanensis</em>), and two newly recorded species (<em>H</em>. <em>albomagnum</em> and <em>H</em>. <em>minum</em>). The distinguishing characters of the new species and subgenera as well as their allied taxa are discussed in the notes which follow them. The delimitation and diversity in morphology, ecology, and phylogeny of <em>Hydnaceae</em> is discussed. Notes of seventeen genera which are phylogenetically accepted in <em>Hydnaceae</em> by this study and a key to the genera in <em>Hydnaceae</em> are provided<em>.</em></p></div>\",\"PeriodicalId\":22036,\"journal\":{\"name\":\"Studies in Mycology\",\"volume\":\"99 \",\"pages\":\"Article 100121\"},\"PeriodicalIF\":14.1000,\"publicationDate\":\"2021-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/17/9d/main.PMC8717575.pdf\",\"citationCount\":\"15\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Studies in Mycology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0166061621000087\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MYCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Studies in Mycology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0166061621000087","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MYCOLOGY","Score":null,"Total":0}
A phylogenetic overview of the Hydnaceae (Cantharellales, Basidiomycota) with new taxa from China
The family Hydnaceae (Cantharellales, Basidiomycota) is a group of fungi found worldwide which exhibit stichic nuclear division. The group is highly diverse in morphology, ecology, and phylogeny, and includes some edible species which are popular all over the world. Traditionally, Hydnaceae together with Cantharellaceae, Clavulinaceae and Sistotremataceae are four families in the Cantharellales. The four families were combined and redefined as “Hydnaceae”, however, a comprehensive phylogeny based on multiple-marker dataset for the entire Hydnaceae sensu stricto is still lacking and the delimitation is also unclear. We inferred Maximum Likelihood and Bayesian phylogenies for the family Hydnaceae from the data of five DNA regions: the large subunit of nuclear ribosomal RNA gene (nLSU), the internal transcribed spacer regions (ITS), the mitochondrial small subunit rDNA gene (mtSSU), the second largest subunit of RNA polymerase II (RPB2) and the translation elongation factor 1-alpha gene (TEF1). We also produced three more phylogenetic trees for Cantharellus based on 5.8S, nLSU, mtSSU, RPB2 and TEF1, Craterellus and Hydnum both based on the combined nLSU and ITS. This study has reproduced the status of Hydnaceae in the order Cantharellales, and phylogenetically confirmed seventeen genera in Hydnaceae. Twenty nine new taxa or synonyms are described, revealed, proposed, or reported, including eight new subgenera (Cantharellus subgenus Magnus, Craterellus subgenus Cariosi, subg. Craterellus, subg. Imperforati, subg. Lamelles, subg. Longibasidiosi, subg. Ovoidei, and Hydnum subgenus Brevispina); seventeen new species (Ca. laevihymeninus, Ca. magnus, Ca. subminor, Cr. badiogriseus, Cr. croceialbus, Cr. macrosporus, Cr. squamatus, H. brevispinum, H. flabellatum, H. flavidocanum, H. longibasidium, H. pallidocroceum, H. pallidomarginatum, H. sphaericum, H. tangerinum, H. tenuistipitum and H. ventricosum); two synonyms (Ca. anzutake and Ca. tuberculosporus as Ca. yunnanensis), and two newly recorded species (H. albomagnum and H. minum). The distinguishing characters of the new species and subgenera as well as their allied taxa are discussed in the notes which follow them. The delimitation and diversity in morphology, ecology, and phylogeny of Hydnaceae is discussed. Notes of seventeen genera which are phylogenetically accepted in Hydnaceae by this study and a key to the genera in Hydnaceae are provided.
期刊介绍:
The international journal Studies in Mycology focuses on advancing the understanding of filamentous fungi, yeasts, and various aspects of mycology. It publishes comprehensive systematic monographs as well as topical issues covering a wide range of subjects including biotechnology, ecology, molecular biology, pathology, and systematics. This Open-Access journal offers unrestricted access to its content.
Each issue of Studies in Mycology consists of around 5 to 6 papers, either in the form of monographs or special focused topics. Unlike traditional length restrictions, the journal encourages submissions of manuscripts with a minimum of 50 A4 pages in print. This ensures a thorough exploration and presentation of the research findings, maximizing the depth of the published work.