两个沙蟹居群遗传距离的PCR分析。

Development & reproduction Pub Date : 2022-06-01 Epub Date: 2022-06-30 DOI:10.12717/DR.2022.26.2.91
Jong-Man Yoon
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引用次数: 1

摘要

用PCR方法扩增了两个种群的基因组DNA (gDNA)。利用这5个寡核苷酸引物(ont -引物)得到每个蟹群共有的独特位点数(ULSECP)和两个蟹群共有的位点数(LSTCP)。在A种群(CCPA)和B种群(CCPB)中分别鉴定出305个片段(FRAGs),其中ULSECP在CCPA和CCPB中分别鉴定出44个(14.43%)和110个(31.98%)。在两个蟹群中共检测到44个LSTCP,平均每个引物8.8个。实体编号之间的带宽共享(BS)值。01和no。10为最低(0.371)。来自CCPA的个体平均ABS值(0.575±0.014)小于来自CCPB的个体(0.705±0.011)(p < 0.05)。5条ont引物得到的极性层次树状图(PHD)显示了3个遗传簇(gc):簇I (CHARYBCRAB 01、04、05、06和08),簇II (CHARYBCRAB 02、03、07、09、10和11)和簇III (CHARYBCRAB 12、13、14、15、16、17、18、19、20、21和22)。表现出显著分子差异的最短遗传距离(GD)是CHARYBCRAB no.;不是的。17(0.055)。
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PCR Analysis for Genetic Distances of Two Charybdis Crab Populations.

Genomic DNA (gDNA) set apart from two populations of Korean Charybdis crab (Charybdis japonica) was augmented by PCR experiments. The five oligonucleotides primers (ONT-primers) were spent to yield the number of unique loci shared to each crab population (ULSECP) and number of loci shared by the two crab populations (LSTCP). 305 fragments (FRAGs) were identified in the Charybdis crab population A (CCPA), and 344 in the Charybdis crab population B (CCPB): 44 number of ULSECP (14.43%) in the CCPA and 110 (31.98%) in the CCPB. 44 number of LSTCP, with an average of 8.8 per primer, were detected in the two crab populations. The bandsharing (BS) value between entity's no. 01 and no. 10 was the lowest (0.371) between the two CCPs. The average bandsharing (ABS) values of individuals in the CCPA (0.575±0.014) were lesser than in those originated from the CCPB (0.705±0.011) (p < 0.05). The polar hierarchical dendrogram (PHD) achieved by the five ONT-primers denotes three genetic clusters (GCs): cluster I (CHARYBCRAB 01, 04, 05, 06, and 08), cluster II (CHARYBCRAB 02, 03, 07, 09, 10, and 11) and cluster III (CHARYBCRAB 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, and 22). The shortest genetic distance (GD) displaying significant molecular difference (MD) was between individuals CHARYBCRAB no. 18 and CHARYBCRAB no. 17 (0.055).

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