从马里亚纳海沟沉积物中分离出的耐压性kunmingstutzerimensis 7850S的全基因组序列

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Marine genomics Pub Date : 2022-12-01 DOI:10.1016/j.margen.2022.100996
Jia-Wei Wang , Kun Shang , Sheng-Yi Wu , Bo-Yu Zhu , Mei-Gui Han , Yuan Zhao , Yi-Qiu Chen , Jia Xie , Bo Huang , Zhuang Han
{"title":"从马里亚纳海沟沉积物中分离出的耐压性kunmingstutzerimensis 7850S的全基因组序列","authors":"Jia-Wei Wang ,&nbsp;Kun Shang ,&nbsp;Sheng-Yi Wu ,&nbsp;Bo-Yu Zhu ,&nbsp;Mei-Gui Han ,&nbsp;Yuan Zhao ,&nbsp;Yi-Qiu Chen ,&nbsp;Jia Xie ,&nbsp;Bo Huang ,&nbsp;Zhuang Han","doi":"10.1016/j.margen.2022.100996","DOIUrl":null,"url":null,"abstract":"<div><p><em>Stutzerimonas kunmingensis</em> 7850S is a piezotolerant bacterium isolated from the sediment of the Mariana trench. Here, we described the complete genome of strain 7850S, which contains a single circular chromosome of 4,775,870 base pairs with 62.66% G + C content, and harbors 4494 protein-coding genes, 65 transfer RNA genes, and 12 ribosomal RNA genes. The experimental results showed that strain 7850S could grow under hydrostatic pressure of 0.1–70 MPa. Genomic analyses led to identifications of numbers of high hydrostatic pressure-associated genes, such as the ones associated with unsaturated fatty acids, betaine, and ectoine. A complete set of denitrification genes and some heavy metal detoxification genes were also found in this strain. The presence of these genes suggests metabolic characteristics for adaption to hadal environments and provides insights to further understand adaption strategies and ecological roles of <em>Stutzerimonas</em> in hadal environments.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":"66 ","pages":"Article 100996"},"PeriodicalIF":1.3000,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Complete genome sequence of piezotolerant Stutzerimonas kunmingensis 7850S isolated from the sediment of the Mariana Trench\",\"authors\":\"Jia-Wei Wang ,&nbsp;Kun Shang ,&nbsp;Sheng-Yi Wu ,&nbsp;Bo-Yu Zhu ,&nbsp;Mei-Gui Han ,&nbsp;Yuan Zhao ,&nbsp;Yi-Qiu Chen ,&nbsp;Jia Xie ,&nbsp;Bo Huang ,&nbsp;Zhuang Han\",\"doi\":\"10.1016/j.margen.2022.100996\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><em>Stutzerimonas kunmingensis</em> 7850S is a piezotolerant bacterium isolated from the sediment of the Mariana trench. Here, we described the complete genome of strain 7850S, which contains a single circular chromosome of 4,775,870 base pairs with 62.66% G + C content, and harbors 4494 protein-coding genes, 65 transfer RNA genes, and 12 ribosomal RNA genes. The experimental results showed that strain 7850S could grow under hydrostatic pressure of 0.1–70 MPa. Genomic analyses led to identifications of numbers of high hydrostatic pressure-associated genes, such as the ones associated with unsaturated fatty acids, betaine, and ectoine. A complete set of denitrification genes and some heavy metal detoxification genes were also found in this strain. The presence of these genes suggests metabolic characteristics for adaption to hadal environments and provides insights to further understand adaption strategies and ecological roles of <em>Stutzerimonas</em> in hadal environments.</p></div>\",\"PeriodicalId\":18321,\"journal\":{\"name\":\"Marine genomics\",\"volume\":\"66 \",\"pages\":\"Article 100996\"},\"PeriodicalIF\":1.3000,\"publicationDate\":\"2022-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Marine genomics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1874778722000745\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Marine genomics","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1874778722000745","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

摘要

昆明Stutzerimonas kunmingensis 7850S是一种从马里亚纳海沟沉积物中分离出来的耐压细菌。本研究描述了菌株7850S的完整基因组,该基因组包含一条单圆形染色体,长度为4,775,870个碱基对,G + C含量为62.66%,包含4494个蛋白质编码基因、65个转移RNA基因和12个核糖体RNA基因。实验结果表明,菌株7850S在0.1 ~ 70 MPa的静水压力下能够生长。基因组分析鉴定出大量与高静水压力相关的基因,如与不饱和脂肪酸、甜菜碱和外托碱相关的基因。在该菌株中还发现了一套完整的反硝化基因和一些重金属脱毒基因。这些基因的存在提示了细菌适应hadal环境的代谢特征,为进一步了解Stutzerimonas在hadal环境中的适应策略和生态作用提供了见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Complete genome sequence of piezotolerant Stutzerimonas kunmingensis 7850S isolated from the sediment of the Mariana Trench

Stutzerimonas kunmingensis 7850S is a piezotolerant bacterium isolated from the sediment of the Mariana trench. Here, we described the complete genome of strain 7850S, which contains a single circular chromosome of 4,775,870 base pairs with 62.66% G + C content, and harbors 4494 protein-coding genes, 65 transfer RNA genes, and 12 ribosomal RNA genes. The experimental results showed that strain 7850S could grow under hydrostatic pressure of 0.1–70 MPa. Genomic analyses led to identifications of numbers of high hydrostatic pressure-associated genes, such as the ones associated with unsaturated fatty acids, betaine, and ectoine. A complete set of denitrification genes and some heavy metal detoxification genes were also found in this strain. The presence of these genes suggests metabolic characteristics for adaption to hadal environments and provides insights to further understand adaption strategies and ecological roles of Stutzerimonas in hadal environments.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
期刊最新文献
Genomic analysis of Marinobacter flavimaris ZYH30 reveals its role in marine dimethylsulfide cycling Complete genome sequence of Alteromonas marina OM2201, a marine bacterium degrading Ulva prolifera polysaccharides isolated from surface of the Yellow Sea The complete genome sequence of Acinetobacter sp. P1332, a tetrodotoxin-producing bacteria Editorial Board Genomic analysis of Sulfitobacter sp. PM12 reveals its role in betaine metabolism
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1