{"title":"从临床标本中分离的产铁载体Pantoea ferrattraens sp. 11和从池塘底部土壤中分离的Pantoea ferramans sp. 11","authors":"Ryo Kutsuna, Tohru Miyoshi-Akiyama, Yuki Muramatsu, Moriyuki Hamada, Junko Tomida, Ken Kikuchi, Yoshiaki Kawamura","doi":"10.1111/1348-0421.13097","DOIUrl":null,"url":null,"abstract":"<p>Two Gram-negative facultative anaerobes were isolated from a sepsis patient with pancreatic cancer (strain PAGU 2156<sup>T</sup>) and soil at the bottom of a pond (strain PAGU 2198<sup>T</sup>), respectively. These two strains formed haloes around the colonies on chrome azurol S agar plates, indicating the production of siderophores. Two isolates assigned to the genus <i>Pantoea</i> based on the 16S rRNA gene were differentiated from established species by using polymorphic taxonomies. Phylogenetic analysis using four housekeeping genes (<i>gyrB, rpoB, atpD</i>, and <i>infB</i>) showed that strain PAGU 2156<sup>T</sup> is closely related to <i>Pantoea cypripedii</i> LMG 2657<sup>T</sup> (89.9%) or <i>Pantoea septica</i> LMG 5345<sup>T</sup> (95.7%). Meanwhile, strain PAGU 2198<sup>T</sup> formed a single clade with <i>Pantoea rodasii</i> DSM 26611<sup>T</sup> (93.6%) and <i>Pantoea rwandensis</i> DSM 105076<sup>T</sup> (93.3%). The average nucleotide identity values obtained from the draft genome assembly showed ≤90.2% between strain PAGU 2156<sup>T</sup> and closely related species and ≤81.5% between strain PAGU 2198<sup>T</sup> and closely related species. Based on various phenotypes, biochemical properties, and whole-cell fatty acid composition compared with related species, it was concluded that each strain should be classified as a new species of the genus <i>Pantoea</i>. In this manuscript, <i>Pantoea ferrattrahens</i> sp. nov. and <i>Pantoea ferramans</i> sp. nov. with strain PAGU 2156<sup>T</sup> (=NBRC 115930<sup>T</sup> = CCUG 76757<sup>T</sup>) and strain PAGU 2198<sup>T</sup> (=NBRC 114265<sup>T</sup> = CCUG 75151<sup>T</sup>) are proposed as each type strain.</p>","PeriodicalId":18679,"journal":{"name":"Microbiology and Immunology","volume":"67 11","pages":"480-489"},"PeriodicalIF":1.9000,"publicationDate":"2023-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Siderophore-producing Pantoea ferrattrahens sp. nov. isolated from a clinical specimen and Pantoea ferramans sp. nov. isolated from soil at the bottom of a pond\",\"authors\":\"Ryo Kutsuna, Tohru Miyoshi-Akiyama, Yuki Muramatsu, Moriyuki Hamada, Junko Tomida, Ken Kikuchi, Yoshiaki Kawamura\",\"doi\":\"10.1111/1348-0421.13097\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Two Gram-negative facultative anaerobes were isolated from a sepsis patient with pancreatic cancer (strain PAGU 2156<sup>T</sup>) and soil at the bottom of a pond (strain PAGU 2198<sup>T</sup>), respectively. These two strains formed haloes around the colonies on chrome azurol S agar plates, indicating the production of siderophores. Two isolates assigned to the genus <i>Pantoea</i> based on the 16S rRNA gene were differentiated from established species by using polymorphic taxonomies. Phylogenetic analysis using four housekeeping genes (<i>gyrB, rpoB, atpD</i>, and <i>infB</i>) showed that strain PAGU 2156<sup>T</sup> is closely related to <i>Pantoea cypripedii</i> LMG 2657<sup>T</sup> (89.9%) or <i>Pantoea septica</i> LMG 5345<sup>T</sup> (95.7%). Meanwhile, strain PAGU 2198<sup>T</sup> formed a single clade with <i>Pantoea rodasii</i> DSM 26611<sup>T</sup> (93.6%) and <i>Pantoea rwandensis</i> DSM 105076<sup>T</sup> (93.3%). The average nucleotide identity values obtained from the draft genome assembly showed ≤90.2% between strain PAGU 2156<sup>T</sup> and closely related species and ≤81.5% between strain PAGU 2198<sup>T</sup> and closely related species. Based on various phenotypes, biochemical properties, and whole-cell fatty acid composition compared with related species, it was concluded that each strain should be classified as a new species of the genus <i>Pantoea</i>. In this manuscript, <i>Pantoea ferrattrahens</i> sp. nov. and <i>Pantoea ferramans</i> sp. nov. with strain PAGU 2156<sup>T</sup> (=NBRC 115930<sup>T</sup> = CCUG 76757<sup>T</sup>) and strain PAGU 2198<sup>T</sup> (=NBRC 114265<sup>T</sup> = CCUG 75151<sup>T</sup>) are proposed as each type strain.</p>\",\"PeriodicalId\":18679,\"journal\":{\"name\":\"Microbiology and Immunology\",\"volume\":\"67 11\",\"pages\":\"480-489\"},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2023-09-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Microbiology and Immunology\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/1348-0421.13097\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"IMMUNOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Microbiology and Immunology","FirstCategoryId":"3","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/1348-0421.13097","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"IMMUNOLOGY","Score":null,"Total":0}
Siderophore-producing Pantoea ferrattrahens sp. nov. isolated from a clinical specimen and Pantoea ferramans sp. nov. isolated from soil at the bottom of a pond
Two Gram-negative facultative anaerobes were isolated from a sepsis patient with pancreatic cancer (strain PAGU 2156T) and soil at the bottom of a pond (strain PAGU 2198T), respectively. These two strains formed haloes around the colonies on chrome azurol S agar plates, indicating the production of siderophores. Two isolates assigned to the genus Pantoea based on the 16S rRNA gene were differentiated from established species by using polymorphic taxonomies. Phylogenetic analysis using four housekeeping genes (gyrB, rpoB, atpD, and infB) showed that strain PAGU 2156T is closely related to Pantoea cypripedii LMG 2657T (89.9%) or Pantoea septica LMG 5345T (95.7%). Meanwhile, strain PAGU 2198T formed a single clade with Pantoea rodasii DSM 26611T (93.6%) and Pantoea rwandensis DSM 105076T (93.3%). The average nucleotide identity values obtained from the draft genome assembly showed ≤90.2% between strain PAGU 2156T and closely related species and ≤81.5% between strain PAGU 2198T and closely related species. Based on various phenotypes, biochemical properties, and whole-cell fatty acid composition compared with related species, it was concluded that each strain should be classified as a new species of the genus Pantoea. In this manuscript, Pantoea ferrattrahens sp. nov. and Pantoea ferramans sp. nov. with strain PAGU 2156T (=NBRC 115930T = CCUG 76757T) and strain PAGU 2198T (=NBRC 114265T = CCUG 75151T) are proposed as each type strain.
期刊介绍:
Microbiology and Immunology is published in association with Japanese Society for Bacteriology, Japanese Society for Virology, and Japanese Society for Host Defense Research. It is peer-reviewed publication that provides insight into the study of microbes and the host immune, biological and physiological responses.
Fields covered by Microbiology and Immunology include:Bacteriology|Virology|Immunology|pathogenic infections in human, animals and plants|pathogenicity and virulence factors such as microbial toxins and cell-surface components|factors involved in host defense, inflammation, development of vaccines|antimicrobial agents and drug resistance of microbes|genomics and proteomics.