GlobalAMFungi:高通量测序代谢编码研究中丛枝菌根真菌发生的全球数据库。

IF 8.3 1区 生物学 Q1 PLANT SCIENCES New Phytologist Pub Date : 2023-10-02 DOI:10.1111/nph.19283
Tomáš Větrovský, Zuzana Kolaříková, Clémentine Lepinay, Sandra Awokunle Hollá, John Davison, Anna Fleyberková, Anastasiia Gromyko, Barbora Jelínková, Miroslav Kolařík, Manuela Krüger, Renata Lejsková, Lenka Michalčíková, Tereza Michalová, Mari Moora, Andrea Moravcová, Štěpánka Moulíková, Iñaki Odriozola, Maarja Öpik, Monika Pappová, Sarah Piché-Choquette, Jakub Skřivánek, Lukáš Vlk, Martin Zobel, Petr Baldrian, Petr Kohout
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引用次数: 0

摘要

丛枝菌根（AM）真菌是大多数植物物种的重要互惠共生体，在植物养分吸收和缓解胁迫方面发挥着重要作用。AM真菌在生态系统中的重要性与我们对AM真菌生物地理学模式和驱动这些模式的环境因素的有限理解形成了鲜明对比。本文发布了一个新开发的全球AM真菌数据集（GlobalAMFungi数据库，https://globalamfungi.com)旨在缩小这种知识差距。它包含近50个 从100项原始研究中获得的近8500个样本中的Glomeromytinian AM真菌扩增子DNA序列的百万次观测，以及地理位置和额外的元数据。GlobalAMFungis数据库建立在源自AM真菌分类单元条形码区域的测序数据上：i）小亚基rRNA（SSU）基因；ii）内部转录间隔区2（ITS2）区域；和iii）大亚基rRNA（LSU）基因。GlobalAMFungi数据库是一个开源和开放访问的倡议，它汇编了AM真菌分布的最全面的图谱。它被设计为一项永久性的努力，其创建者将通过科学界的合作不断更新。本研究还记录了数据集的适用性，以更好地了解AM真菌分类群的生态学。
本文章由计算机程序翻译，如有差异，请以英文原文为准。

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GlobalAMFungi: a global database of arbuscular mycorrhizal fungal occurrences from high-throughput sequencing metabarcoding studies

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来源期刊
New Phytologist
New Phytologist 生物-植物科学
自引率
5.30%
发文量
728
期刊介绍： New Phytologist is an international electronic journal published 24 times a year. It is owned by the New Phytologist Foundation, a non-profit-making charitable organization dedicated to promoting plant science. The journal publishes excellent, novel, rigorous, and timely research and scholarship in plant science and its applications. The articles cover topics in five sections: Physiology & Development, Environment, Interaction, Evolution, and Transformative Plant Biotechnology. These sections encompass intracellular processes, global environmental change, and encourage cross-disciplinary approaches. The journal recognizes the use of techniques from molecular and cell biology, functional genomics, modeling, and system-based approaches in plant science. Abstracting and Indexing Information for New Phytologist includes Academic Search, AgBiotech News & Information, Agroforestry Abstracts, Biochemistry & Biophysics Citation Index, Botanical Pesticides, CAB Abstracts®, Environment Index, Global Health, and Plant Breeding Abstracts, and others.
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