使用大规模基因数据库的von Willebrand病基于人群的流行率和突变景观。

IF 4.7 2区 医学 Q1 GENETICS & HEREDITY NPJ Genomic Medicine Pub Date : 2023-10-16 DOI:10.1038/s41525-023-00375-8
Omid Seidizadeh, Andrea Cairo, Luciano Baronciani, Luca Valenti, Flora Peyvandi
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引用次数: 0

摘要

血管性血友病(VWD)是一种常见的出血性疾病,由血管性血友病因子基因(VWF)突变引起。VWD的真实全球流行率尚未准确确定。我们通过分析基因组聚集数据库(gnomAD)收集的141456个个体的外显子组和基因组数据,估计了遗传性VWD在全球和人群内的流行率。我们还通过挖掘包含VWF变体的主要数据库,即莱顿开放变异数据库(LOVD)和人类基因突变数据库(HGMD),扩展了我们的数据深化,目的是探索VWD的全球突变谱。在gnomAD人群中共鉴定出4313种VWF变体,其中505种被预测为致病性或已报告与VWD相关。在分析的282912个等位基因中,31785个受到上述变体的影响。1000名个体中显性VWD的全球患病率被确定为1型74,2A型3,2B型3,2M型6。隐性VWD形式(2N型和3型)的全球患病率分别为0.31和0.7‰。这项综合分析通过HGMD和LOVD数据集中已经报道的927种变体和gnomAD中鉴定的287种新的致病性变体,提供了VWF的全球突变景观。我们的研究结果表明,与VWD相关的假定疾病等位基因和变异的患病率远高于预期,并表明大量VWD患者未被诊断。
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Population-based prevalence and mutational landscape of von Willebrand disease using large-scale genetic databases.

Von Willebrand disease (VWD) is a common bleeding disorder caused by mutations in the von Willebrand factor gene (VWF). The true global prevalence of VWD has not been accurately established. We estimated the worldwide and within-population prevalence of inherited VWD by analyzing exome and genome data of 141,456 individuals gathered by the genome Aggregation Database (gnomAD). We also extended our data deepening by mining the main databases containing VWF variants i.e., the Leiden Open Variation Database (LOVD) and the Human Gene Mutation Database (HGMD) with the goal to explore the global mutational spectrum of VWD. A total of 4,313 VWF variants were identified in the gnomAD population, of which 505 were predicted to be pathogenic or already reported to be associated with VWD. Among the 282,912 alleles analyzed, 31,785 were affected by the aforementioned variants. The global prevalence of dominant VWD in 1000 individuals was established to be 74 for type 1, 3 for 2A, 3 for 2B and 6 for 2M. The global prevalences for recessive VWD forms (type 2N and type 3) were 0.31 and 0.7 in 1000 individuals, respectively. This comprehensive analysis provided a global mutational landscape of VWF by means of 927 already reported variants in the HGMD and LOVD datasets and 287 novel pathogenic variants identified in the gnomAD. Our results reveal that there is a considerably higher than expected prevalence of putative disease alleles and variants associated with VWD and suggest that a large number of VWD patients are undiagnosed.

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来源期刊
NPJ Genomic Medicine
NPJ Genomic Medicine Biochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
9.40
自引率
1.90%
发文量
67
审稿时长
17 weeks
期刊介绍: npj Genomic Medicine is an international, peer-reviewed journal dedicated to publishing the most important scientific advances in all aspects of genomics and its application in the practice of medicine. The journal defines genomic medicine as "diagnosis, prognosis, prevention and/or treatment of disease and disorders of the mind and body, using approaches informed or enabled by knowledge of the genome and the molecules it encodes." Relevant and high-impact papers that encompass studies of individuals, families, or populations are considered for publication. An emphasis will include coupling detailed phenotype and genome sequencing information, both enabled by new technologies and informatics, to delineate the underlying aetiology of disease. Clinical recommendations and/or guidelines of how that data should be used in the clinical management of those patients in the study, and others, are also encouraged.
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