拟立克次体肝杆菌鞭毛系统的生物信息学分析

IF 0.1 4区 生物学 Q4 MARINE & FRESHWATER BIOLOGY Revista De Biologia Marina Y Oceanografia Pub Date : 2017-04-01 DOI:10.4067/S0718-19572017000100010
J. Leyva, M. Martínez-Porchas, Francisco Vargas-Albores, Jorge Hernández-López, Teresa Gollas-Galván
{"title":"拟立克次体肝杆菌鞭毛系统的生物信息学分析","authors":"J. Leyva, M. Martínez-Porchas, Francisco Vargas-Albores, Jorge Hernández-López, Teresa Gollas-Galván","doi":"10.4067/S0718-19572017000100010","DOIUrl":null,"url":null,"abstract":"The presence of flagellar systems is common in several free-living bacteria; however, these have been considered absent in bacteria belonging to the Rickettsiales order. Candidatus Hepatobacter penaei is a marine Rickettsial bacterium described as a motile microorganism propelled by a flagellar system that facilitates infection. This bacterium represents a major risk of infection in shrimp farms. Therefore, the objective of this study was to determine the presence of genes encoding the flagellar system proteins of the bacterium Candidatus Hepatobacter penaei. The genomic sequence of the GenBank database with accession number NZ_JQAJ00000000.1, was analyzed. After genes were identified, amino acid sequences were deduced. The amino acid sequences of the flagellar system were identified by BLASTP through multiple alignment of conserved domains. Subsequently, a modeling process of FlhA protein was performed and compared with the protein reported for Oceanibaculum indicum considering the formation of -helixes and -sheets. Results showed the presence of some amino acid sequences of the genes related to bacterial flagellar system as MotA FliG, FliN, FliL FlhA, FlhB, FliQ FliR and FliF. Finally, these results suggest that Candidatus Hepatobacter penaei is a rickettsial bacterium having a flagellar system, which possibly confers motility and take part in the infection process in hosts such as marine crustaceans.","PeriodicalId":54475,"journal":{"name":"Revista De Biologia Marina Y Oceanografia","volume":null,"pages":null},"PeriodicalIF":0.1000,"publicationDate":"2017-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.4067/S0718-19572017000100010","citationCount":"1","resultStr":"{\"title\":\"Análisis bioinformático del sistema flagelar de la alphaproteobacteria tipo rickettsia Candidatus Hepatobacter penaei\",\"authors\":\"J. Leyva, M. Martínez-Porchas, Francisco Vargas-Albores, Jorge Hernández-López, Teresa Gollas-Galván\",\"doi\":\"10.4067/S0718-19572017000100010\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The presence of flagellar systems is common in several free-living bacteria; however, these have been considered absent in bacteria belonging to the Rickettsiales order. Candidatus Hepatobacter penaei is a marine Rickettsial bacterium described as a motile microorganism propelled by a flagellar system that facilitates infection. This bacterium represents a major risk of infection in shrimp farms. Therefore, the objective of this study was to determine the presence of genes encoding the flagellar system proteins of the bacterium Candidatus Hepatobacter penaei. The genomic sequence of the GenBank database with accession number NZ_JQAJ00000000.1, was analyzed. After genes were identified, amino acid sequences were deduced. The amino acid sequences of the flagellar system were identified by BLASTP through multiple alignment of conserved domains. Subsequently, a modeling process of FlhA protein was performed and compared with the protein reported for Oceanibaculum indicum considering the formation of -helixes and -sheets. Results showed the presence of some amino acid sequences of the genes related to bacterial flagellar system as MotA FliG, FliN, FliL FlhA, FlhB, FliQ FliR and FliF. Finally, these results suggest that Candidatus Hepatobacter penaei is a rickettsial bacterium having a flagellar system, which possibly confers motility and take part in the infection process in hosts such as marine crustaceans.\",\"PeriodicalId\":54475,\"journal\":{\"name\":\"Revista De Biologia Marina Y Oceanografia\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.1000,\"publicationDate\":\"2017-04-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.4067/S0718-19572017000100010\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Revista De Biologia Marina Y Oceanografia\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.4067/S0718-19572017000100010\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MARINE & FRESHWATER BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Revista De Biologia Marina Y Oceanografia","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.4067/S0718-19572017000100010","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MARINE & FRESHWATER BIOLOGY","Score":null,"Total":0}
引用次数: 1

摘要

鞭毛系统的存在在一些自由生活的细菌中是常见的;然而,这些被认为在属于立克次体目的细菌中不存在。penaei候选肝杆菌是一种海洋立克次体细菌,被描述为一种由鞭毛系统推动的运动微生物,促进感染。这种细菌是虾养殖场感染的主要风险。因此,本研究的目的是确定penaei候选肝杆菌鞭毛系统蛋白编码基因的存在。分析GenBank数据库的基因组序列,登录号为nz_jqaj000000001。基因鉴定后,推导出氨基酸序列。利用BLASTP技术,通过保守结构域的多次比对,鉴定了鞭毛系统的氨基酸序列。随后,进行了FlhA蛋白的建模过程,并将其与已报道的Oceanibaculum indicum蛋白进行了比较,考虑了-螺旋和-sheet的形成。结果表明,细菌鞭毛系统相关基因中存在MotA FliG、FliN、FliL FlhA、FlhB、FliQ FliR和FliF等氨基酸序列。最后,这些结果表明,penaei候选肝杆菌是一种具有鞭毛系统的立克次体细菌,它可能赋予运动性并参与宿主(如海洋甲壳类动物)的感染过程。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Análisis bioinformático del sistema flagelar de la alphaproteobacteria tipo rickettsia Candidatus Hepatobacter penaei
The presence of flagellar systems is common in several free-living bacteria; however, these have been considered absent in bacteria belonging to the Rickettsiales order. Candidatus Hepatobacter penaei is a marine Rickettsial bacterium described as a motile microorganism propelled by a flagellar system that facilitates infection. This bacterium represents a major risk of infection in shrimp farms. Therefore, the objective of this study was to determine the presence of genes encoding the flagellar system proteins of the bacterium Candidatus Hepatobacter penaei. The genomic sequence of the GenBank database with accession number NZ_JQAJ00000000.1, was analyzed. After genes were identified, amino acid sequences were deduced. The amino acid sequences of the flagellar system were identified by BLASTP through multiple alignment of conserved domains. Subsequently, a modeling process of FlhA protein was performed and compared with the protein reported for Oceanibaculum indicum considering the formation of -helixes and -sheets. Results showed the presence of some amino acid sequences of the genes related to bacterial flagellar system as MotA FliG, FliN, FliL FlhA, FlhB, FliQ FliR and FliF. Finally, these results suggest that Candidatus Hepatobacter penaei is a rickettsial bacterium having a flagellar system, which possibly confers motility and take part in the infection process in hosts such as marine crustaceans.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
0.70
自引率
0.00%
发文量
41
审稿时长
12 months
期刊介绍: Publicar desde una perspectiva científica, artículos originales, decididos por un proceso de revisión por pares, invitando a expertos de reconocido prestigio en el área. Los trabajos publicados se caracterizarán por su solidez teórica-metodológica, actualidad y relevancia para las ciencias marinas. Se reciben trabajos inéditos derivados de la investigación científica realizada en ambientes marinos y estuarios, en formato de Revisión, Artículos, Notas Científicas, y Obituarios en las siguientes disciplinas:: Biología-Ecología marina Oceanografía física, química y biológica Contaminación marina Geología marina Sistemática, Faunística y Biogeografía Marina Manejo Costero Acuicultura marina Pesquería marina.
期刊最新文献
Size selectivity and optimal soaking time of hoops and traps targeting the blue swimming crab Callinectes arcuatus in Cuyutlan Lagoon, Mexico Parámetros poblacionales de Nototropis minikoi y Ampithoe longimana (Crustacea: Amphipoda) en dos Islas del Mar Caribe mexicano Observations on the early development of the kelpfish Myxodes viridis (Clinidae) with the first description of their spawning habitat in subtidal kelp forests (Lessonia trabeculata) Capacidad de biofiltración de nutrientes y crecimiento de macroalgas utilizando efluentes generados en el cultivo del pez dorado Seriola lalandi (Perciformes: Carangidae) Abundance of early life stages of the surf silverside Notocheirus hubbsi (Teleostei, Atheriniformes) in the coastal nearshore of central Chile
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1