猪带绦虫cDNA文库剪接前导PCR筛选三个cDNA的特性

IF 0.6 Q3 MULTIDISCIPLINARY SCIENCES Uniciencia Pub Date : 2022-06-01 DOI:10.15359/ru.36-1.31
Oswgladys Garrido, E. Ferrer
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引用次数: 0

摘要

猪带绦虫囊尾蚴或囊尾蚴引起囊尾蚴病,是脑囊虫病(NCC)的主要病理。基因特征对于了解寄生虫生物学、了解寄生虫与宿主的关系以及确定诊断、治疗和保护的可能靶点至关重要。本工作的目的是通过对猪带绦虫cDNA文库的剪接前导PCR筛选获得三种新cDNA(TsTF10、TsAAP8和TsrGAP8)的分子和生物信息学特征。将三种cDNA的序列与核酸和蛋白质数据库(GenBank,EMBL)中的序列进行比较,并通过生物信息学程序(国家生物技术信息中心的CDD Search、欧洲生物信息学研究所的Interpro、瑞士生物信息学研究所的蛋白质组学服务器的Motif扫描和专家蛋白质分析系统)进行分析。考虑到与相关蠕虫(亚洲带绦虫、细粒棘球蚴、多房棘球蚴和缩小膜壳虫)的类似分子的高度同一性以及所发现的功能结构域,带绦虫的TsTF10、TsAAP8和TsrGAP8基因可以作为核转录因子γ,分别为推定的液泡ATP酶膜区段相关蛋白和Rho-GTPase活化蛋白。尽管在序列中可以预测的B表位很少,但将其评估为诊断和保护囊尾蚴病的可能候选者可能是相关的。对这些序列的表征和分析,以及对其作为抗原、疫苗或治疗靶点的可能用途的预测,有助于未来研究的设计和规划。
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Characterization of Three cDNAs Obtained by Spliced Leader-PCR Screening of a Taenia solium cDNA Library
Cysticerci or metacestodes of Taenia solium cause cysticercosis, being the neurocysticercosis (NCC) the main pathology. The characterization of genes is essential for the knowledge of parasite biology, the understanding of the parasite-host relationship, and the identification of possible targets for diagnosis, treatment, and protection. The objective of this work was the molecular and bioinformatic characterization of three news cDNAs (TsTF10, TsAAP8, and TsrGAP8), obtained by spliced leader-PCR screening of a Taenia solium cDNA library. The sequences of the three cDNA were compared with the sequences in the nucleic acid and protein databases (GenBank, EMBL) and analyzed by bioinformatic programs (CDD-Search of the National Center for Biotechnology Information, Interpro of the European Bioinformatics Institute, Motif scan and Expert Protein Analysis System of the Proteomics Server from Swiss Institute of Bioinformatics). Considering the high identities with similar molecules of related helminths (Taenia asiatica, Echinococcus granulosus, Echinococcus multilocularis, and Hymenolepis diminuta) and the functional domains found, the TsTF10, TsAAP8, and TsrGAP8 genes of Taenia could act as a nuclear transcription factor gamma, a putative vacuolar ATPase membrane sector associated protein and a Rho GTPase activating protein, respectively. Although few B epitopes could be predicted in the sequences, it could be relevant to evaluate them as possible candidates for diagnosis and protection in cysticercosis. The characterization and analysis of these sequences and the prediction of their possible usefulness as antigens, vaccines, or therapeutic targets contribute to the designing and planning of future studies.
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来源期刊
Uniciencia
Uniciencia MULTIDISCIPLINARY SCIENCES-
CiteScore
1.60
自引率
12.50%
发文量
49
审稿时长
40 weeks
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