CellML 2.0.1

IF 1.5 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Journal of Integrative Bioinformatics Pub Date : 2023-03-01 DOI:10.1515/jib-2023-0003
M. Clerx, M. Cooling, Jonathan A. Cooper, A. Garny, Keri R. Moyle, D. Nickerson, P. Nielsen, Hugh Sorby
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引用次数: 1

摘要

本文介绍了一种基于xml的语言CellML 2.0.1,用于描述和交换生理系统的数学模型。嵌入在CellML文档中的MathML用于定义模型的底层数学。模型由可重用组件的网络组成,每个组件都有变量和给出这些变量之间关系的方程。模型可以导入其他模型来创建越来越复杂的系统。这里介绍的CellML 2.0.1是由规范规范定义的,它规定了CellML语法和应该使用它的规则。规范规范主要针对直接使用CellML语法的软件工具的开发人员。CellML模型的用户可能更喜欢浏览规范的信息呈现(https://cellml.org/specifications/cellml_2.0/),它通过对规则的解释和使用示例的结合扩展了规范规范。这个版本改进了规则语句的识别,并纠正了CellML 2.0规范中存在的勘误表。
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CellML 2.0.1
Abstract We present here CellML 2.0.1, an XML-based language for describing and exchanging mathematical models of physiological systems. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equations giving relationships between those variables. Models may import other models to create systems of increasing complexity. CellML 2.0.1 is defined by the normative specification presented here, prescribing the CellML syntax and the rules by which it should be used. The normative specification is intended primarily for the developers of software tools which directly consume CellML syntax. Users of CellML models may prefer to browse the informative rendering of the specification (https://cellml.org/specifications/cellml_2.0/) which extends the normative specification with explanations of the rules combined with examples of their usage. This version improves the identification of rule statements and corrects errata present in the CellML 2.0 specification.
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来源期刊
Journal of Integrative Bioinformatics
Journal of Integrative Bioinformatics Medicine-Medicine (all)
CiteScore
3.10
自引率
5.30%
发文量
27
审稿时长
12 weeks
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