R-AMMI-LM:线性拟合鲁棒- ammi模型分析基因型与环境的相互作用

IF 1 4区 生物学 Q3 PLANT SCIENCES Indian Journal of Genetics and Plant Breeding Pub Date : 2021-03-22 DOI:10.31742/ijgpb.81.1.9
B. Ajay, K. Ramya, R. A. Fiyaz, G. Govindaraj, S. Bera, N. Kumar, K. Gangadhar, Praveen Kona, G. P. Singh, T. Radhakrishnan
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引用次数: 2

摘要

在野外条件下,在不同地点和年份评估基因型时,异常值是一种常见现象,这种异常值使研究基因型与环境的相互作用变得困难。鲁棒- ammi模型使用鲁棒拟合和鲁棒SVD方法的组合,称为“R-AMMI-RLM”,已被提出用于研究存在此类异常值的GEI。代替“R-AMMI-RLM”,我们提出了一个模型,该模型使用线性拟合和鲁棒SVD的组合来研究存在异常值的GEI,我们将该模型称为“R-AMMI-LM”。在这里,我们证明' RAMMI-LM '优于' R-AMMI-RLM ',因为它记录了非常低的残差平方和和低RMSE值。因此,即使存在异常值,“R-AMMI-LM”模型也可以更精确地解释GEI。
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R-AMMI-LM: Linear-fit Robust-AMMI model to analyze genotype-by environment interactions
Outliers are a common phenomenon when genotypes are evaluated over locations and years under field conditions and such outliers makes studying genotype-environment Interactions difficult. Robust-AMMI models which use a combination of robust fit and robust SVD approaches, denoted as ‘R-AMMI-RLM’ have been proposed to study GEI in presence of such outliers. Instead of ‘R-AMMI-RLM’ we propose a model which uses a combination of linear fit and robust SVD to study GEI in presence of outliers and we denote this model as ‘R-AMMI-LM’. Here we prove that ‘RAMMI-LM’ was superior over ‘R-AMMI-RLM’ as it recorded very low residual sum of squares and low RMSE values. Thus proposed, ‘R-AMMI-LM’ model could explain the GEI more precisely even in presence of outliers.
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来源期刊
CiteScore
1.80
自引率
10.00%
发文量
0
审稿时长
6-12 weeks
期刊介绍: Advance the cause of genetics and plant breeding and to encourage and promote study and research in these disciplines in the service of agriculture; to disseminate the knowledge of genetics and plant breeding; provide facilities for association and conference among students of genetics and plant breeding and for encouragement of close relationship between them and those in the related sciences; advocate policies in the interest of the nation in the field of genetics and plant breeding, and facilitate international cooperation in the field of genetics and plant breeding.
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