1.2 GHz的细胞内蛋白质核磁共振光谱

IF 1.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Biomolecular NMR Pub Date : 2021-02-12 DOI:10.1007/s10858-021-00358-w
Enrico Luchinat, Letizia Barbieri, Matteo Cremonini, Lucia Banci
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引用次数: 33

摘要

细胞内核磁共振波谱在原子分辨率上提供了生物大分子在其原生细胞环境中的宝贵结构和功能信息。然而,核磁共振固有的低灵敏度限制了该方法的适用性。在这方面,最近开发的商业1.2?GHz核磁共振波谱仪有望带来显著的效益。然而,细胞样本在超高场下可能会受到有害影响,这一点必须仔细评估。这里我们展示了在1.2?在人体细胞上,我们比较了900和950兆赫的分辨率和灵敏度。为了评价不同自旋弛豫速率对细胞内α-突触核蛋白和碳酸酐酶的影响,记录了SOFAST-HMQC和BEST-TROSY光谱。在1.2?在分析未折叠蛋白(如α-synuclein)时,分辨率为GHz,而TROSY方案提高了球形和未折叠蛋白的分辨率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Protein in-cell NMR spectroscopy at 1.2 GHz

In-cell NMR spectroscopy provides precious structural and functional information on biological macromolecules in their native cellular environment at atomic resolution. However, the intrinsic low sensitivity of NMR imposes a big limitation in the applicability of the methodology. In this respect, the recently developed commercial 1.2?GHz NMR spectrometer is expected to introduce significant benefits. However, cell samples may suffer from detrimental effects at ultrahigh fields, that must be carefully evaluated. Here we show the first in-cell NMR spectra recorded at 1.2?GHz on human cells, and we compare resolution and sensitivity against those obtained at 900 and 950?MHz. To evaluate the effects of different spin relaxation rates, SOFAST-HMQC and BEST-TROSY spectra were recorded on intracellular α-synuclein and carbonic anhydrase. Major improvements are observed at 1.2?GHz when analyzing unfolded proteins, such as α-synuclein, while the TROSY scheme improves the resolution for both globular and unfolded proteins.

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来源期刊
Journal of Biomolecular NMR
Journal of Biomolecular NMR 生物-光谱学
CiteScore
6.00
自引率
3.70%
发文量
19
审稿时长
6-12 weeks
期刊介绍: The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include: Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR. New NMR techniques for studies of biological macromolecules. Novel approaches to computer-aided automated analysis of multidimensional NMR spectra. Computational methods for the structural interpretation of NMR data, including structure refinement. Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals. New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.
期刊最新文献
Pitfalls in measurements of R1 relaxation rates of protein backbone 15N nuclei. Towards cost-effective side-chain isotope labelling of proteins expressed in human cells. Optimising in-cell NMR acquisition for nucleic acids. Transverse relaxation optimized spectroscopy of NH2 groups in glutamine and asparagine side chains of proteins. Micromolar fluoride contamination arising from glass NMR tubes and a simple solution for biomolecular applications
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