一种基于混合CNN-XGB模型的人工智能方法,通过特征提取、分类和回归实现高预测精度,增强生物医学中的药物发现

Q4 Biochemistry, Genetics and Molecular Biology International Journal of Biology and Biomedical Engineering Pub Date : 2021-06-02 DOI:10.46300/91011.2021.15.22
Mukesh Madanan, B. Sayed, Nurul Akhmal Mohd Zulkefli, Nitha C. Velayudhan
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引用次数: 2

摘要

在生物医学领域,药物发现是测试和发明治疗疾病的新药物和即将问世的药物的周期。药物的发现和改进是一个广泛的、复杂的、过高的循环,在很大程度上存在着药物是否真正成功的脆弱性。开发新药是当前生物医学领域的一大挑战。在这些最后通牒中,预测细胞系对注射或消耗的药物的反应是一个重要的点,这可以最大限度地减少药物发现的成本,以复杂的方式,以最小的计算时间为重点。本文提出一种深度神经网络结构卷积神经网络(Convolutional neural network, CNN),保留细胞系的基因表达特征,然后将得到的抽象特征作为XGBoost的输入数据进行药物反应预测。使用先前确定的抗癌药物相关癌症分子特征数据集与现有方法和提出的Hybrid CNNXGB模型进行比较。结果表明,该预测模型在药物效率预测精度上有较大幅度的提高。
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An Artificial Intelligence Approach Based on Hybrid CNN-XGB Model to Achieve High Prediction Accuracy through Feature Extraction, Classification and Regression for Enhancing Drug Discovery in Biomedicine
In the field of biomedicine, drug discovery is the cycle by which new and upcoming medicines are tested and invented to cure ailments. Drug discovery and improvement is an extensive, complex, and exorbitant cycle, settled in with a serious extent of vulnerability that a drug will really be successful or not. Developing new drugs have several challenges to enrich the current field of biomedicine. Among these ultimatums, predicting the reaction of the cell line to the injected or consumed drug is a significant point and this can minimize the cost of drug discovery in sophisticated fashion with a stress on the minimum computational time. Herein, the paper proposes a deep neural network structure as the Convolutional Neural Network (CNN) to detain the gene expression features of the cell line and then use the resulting abstract features as the input data of the XGBoost for drug response prediction. Dataset constituting previously identified molecular features of cancers associated to anti-cancer drugs are used for comparison with existing methods and proposed Hybrid CNNXGB model. The results evidently depicted that the predicted model can attain considerable enhanced performance in the prediction accuracy of drug efficiency.
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来源期刊
International Journal of Biology and Biomedical Engineering
International Journal of Biology and Biomedical Engineering Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)
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发文量
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期刊介绍: Topics: Molecular Dynamics, Biochemistry, Biophysics, Quantum Chemistry, Molecular Biology, Cell Biology, Immunology, Neurophysiology, Genetics, Population Dynamics, Dynamics of Diseases, Bioecology, Epidemiology, Social Dynamics, PhotoBiology, PhotoChemistry, Plant Biology, Microbiology, Immunology, Bioinformatics, Signal Transduction, Environmental Systems, Psychological and Cognitive Systems, Pattern Formation, Evolution, Game Theory and Adaptive Dynamics, Bioengineering, Biotechnolgies, Medical Imaging, Medical Signal Processing, Feedback Control in Biology and Chemistry, Fluid Mechanics and Applications in Biomedicine, Space Medicine and Biology, Nuclear Biology and Medicine.
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