硅预测确定流产衣原体多态性膜蛋白(PMP17G)片段中存在高度特异性的免疫原性表位

Q3 Agricultural and Biological Sciences Tropical and Subtropical Agroecosystems Pub Date : 2023-08-16 DOI:10.56369/tsaes.4615
Fernando De Jesús Aldama, Roberto Montes de Oca Jiménez, Beatriz Arellano Reynoso
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引用次数: 0

摘要

背景绵羊人工流产是一种传染性传染病,由革兰氏阴性和专性细胞内细菌流产衣原体引起。对于现场诊断,使用商业血清学测试;然而,由于所使用的抗原对其他病原体具有交叉反应,其中一些测试显示出较低的敏感性和特异性。为了获得最准确的诊断,有必要开发具有更特异性抗原的测试,如多态性膜蛋白(Pmp’s),从而使用新技术确定特定表位的存在。客观的在计算机上确定PMP17G蛋白的两个片段是否存在对流产衣原体具有特异性免疫原性潜力的表位。方法论片段的克隆和测序是在两个生物信息学软件的帮助下从流产衣原体的野外分离物中进行的,并通过对这些序列的分析。后果发现流产衣原体的几个表位,rCOMP90-3(8个表位)和rCOMP90-4(1个表位。含义。生物信息学分析表明,蛋白质的两个片段都具有激活免疫系统的能力,这将有助于开发诊断试剂盒和免疫原。结论。计算机分析可以有效地预测和鉴定两个蛋白质片段中针对流产衣原体的特异性表位。
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LA PREDICCIÓN IN SILICO DETERMINA LA PRESENCIA DE EPÍTOPOS INMUNOGÉNICOS ALTAMENTE ESPECÍFICOS EN FRAGMENTOS DE LA PROTEÍNA DE LA MEMBRANA POLIMÓRFICA (PMP17G) DE Chlamydia abortus

Background. Ovine Enzootic Abortion is a contagious infectious disease caused by a Gram negative and obligate intracellular bacterium, Chlamydia abortus. For field diagnosis, commercial serological tests are used; however, some of these tests show low sensitivity and specificity rates, due to the cross-reactions that the antigens used have against other pathogens. For the most accurate diagnosis, it is necessary to develop tests with more specific antigens such as polymorphic membrane proteins (Pmp's), that allow to determine the presence of specific epitopes using new technologies. Objective. To determine in silico the presence of epitopes with specific immunogenic potential against Chlamydia abortus of two fragments of the PMP17G protein. Methodology. The cloning and sequencing of the fragments was carried out from a field isolate of Chlamydia abortus, and from the analysis of these sequences, with the help of two bioinformatics software’s. Results. Several epitopes from Chlamydia abortus were found, rPOMP90-3 (eight epitopes) and rPOMP90-4 (one epitope). Implications. Bioinformatics analysis indicated that both fragments of the protein have the capacity to activate the immune system, which would be useful for the development of diagnostic kits and immunogens. Conclusions. The in silico analysis allowed to efficiently predict and identify specific epitopes against Chlamydia abortus in both fragments of the protein. 

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来源期刊
Tropical and Subtropical Agroecosystems
Tropical and Subtropical Agroecosystems Agricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
CiteScore
1.00
自引率
0.00%
发文量
49
审稿时长
24 weeks
期刊介绍: The journal is an international peer-reviewed publication devoted to disseminate original information contributing to the understanding and development of agroecosystems in tropical and subtropical areas. The Journal recognizes the multidisciplinary nature of its scope and encourages the submission of original manuscripts from all of the disciplines involved in this area. Original contributions are welcomed in relation to the study of particular components of the agroecosystems (i.e. plant, animal, soil) as well as the resulting interactions and their relationship/impact on society and environment. The journal does not received manuscripts based solely on economic acpects o food technology.
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