在负载范围内多蛋白的顺序展开中捕获的非指数动力学

IF 2.7 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Current Research in Structural Biology Pub Date : 2022-01-01 DOI:10.1016/j.crstbi.2022.04.003
Einat Chetrit , Sabita Sharma , Uri Maayan , Maya Georgia Pelah , Ziv Klausner , Ionel Popa , Ronen Berkovich
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引用次数: 1

摘要

当在体内承受机械负荷时,多蛋白通过展开和扩展其组成结构域,在组织弹性和机械转导的调节等细胞机制中起着至关重要的作用。人们普遍认为,多蛋白的顺序展开过程遵循指数动力学,因为单个展开事件表现出相同和同分布(iid)泊松行为。然而,研究表明,在高载荷下,顺序展开动力学表现为非指数动力学,暗示了亚扩散过程的老化。该动力学的统计阶数分析表明,单个展开事件不是iid的,不能定义为泊松(无记忆)过程。基于数值模拟,认为这种行为随着载荷的降低而变得不那么明显,因此可以预期,在较低的力下展开的多蛋白将遵循泊松行为。这一期望是本研究的动机,在本研究中,我们研究了力降低对Poly-L8在不同载荷下展开动力学的影响,特别是高(150、100 pN)和中低(45、30、20 pN)的力。我们发现,即使在低负载下,展开事件之间仍然存在层次结构,这再次导致非指数行为。我们观察到用扩展指数和幂律分析停留时间分布会产生不同的现象趋势。通过统计阶数分析,我们证明了即使在最低负荷下,顺序展开也不能被认为是iid,符合幂律分布。额外的自由能分析揭示了展开段弹性的贡献,它随力在能量景观的整体一维轮廓上的比例而变化,但更重要的是,它揭示了顺序展开过程中激活障碍的层次结构,这解释了观察到的非指数性。
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Nonexponential kinetics captured in sequential unfolding of polyproteins over a range of loads

While performing under mechanical loads in vivo, polyproteins are vitally involved in cellular mechanisms such as regulation of tissue elasticity and mechano-transduction by unfolding their comprising domains and extending them. It is widely thought that the process of sequential unfolding of polyproteins follows an exponential kinetics as the individual unfolding events exhibit identical and identically distributed (iid) Poisson behavior. However, it was shown that under high loads, the sequential unfolding kinetics displays nonexponential kinetics that alludes to aging by a subdiffusion process. Statistical order analysis of this kinetics indicated that the individual unfolding events are not iid, and cannot be defined as a Poisson (memoryless) process. Based on numerical simulations it was argued that this behavior becomes less pronounced with lowering the load, therefore it is to be expected that polyproteins unfolding under lower forces will follow a Poisson behavior. This expectation serves as the motivation of the current study, in which we investigate the effect of force lowering on the unfolding kinetics of Poly-L8 under varying loads, specifically high (150, 100 ​pN) and moderate-low (45, 30, 20 ​pN) forces. We found that a hierarchy among the unfolding events still exists even under low loads, again resulting in nonexponential behavior. We observe that analyzing the dwell-time distributions with stretched-exponentials and power laws give rise to different phenomenological trends. Using statistical order analysis, we demonstrated that even under the lowest load, the sequential unfolding cannot be considered as iid, in accord with the power law distribution. Additional free energy analysis revealed the contribution of the unfolded segments elasticity that scales with the force on the overall one-dimensional contour of the energy landscape, but more importantly, it discloses the hierarchy within the activation barriers during sequential unfolding that account for the observed nonexponentiality.

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来源期刊
CiteScore
4.60
自引率
0.00%
发文量
33
审稿时长
104 days
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