利用线粒体基因组学对Panopedae和更广泛的真短尾目(十足目:短尾目)的系统评估

IF 1.5 2区 农林科学 Q2 ENTOMOLOGY Arthropod Systematics & Phylogeny Pub Date : 2021-11-23 DOI:10.3897/asp.79.e70234
Lucas A. Jennings, A. Blakeslee, K. McCoy, Donald C. Behringer, J. Bojko
{"title":"利用线粒体基因组学对Panopedae和更广泛的真短尾目(十足目:短尾目)的系统评估","authors":"Lucas A. Jennings, A. Blakeslee, K. McCoy, Donald C. Behringer, J. Bojko","doi":"10.3897/asp.79.e70234","DOIUrl":null,"url":null,"abstract":"Abstract\n \n This study provides a broad phylogenetic analysis for the Eubrachyura, with the inclusion of three new Panopeidae mitochondrial genomes: Eurypanopeus depressus (flatback mud crab) (15,854bp), Panopeus herbstii (Atlantic mud crab) (15,812bp) and Rhithropanopeus harrisii (Harris, or ‘white-fingered’ mud crab) (15,892bp). These new mitogenomes were analyzed alongside all available brachyuran mitochondrial genomes (n = 113), comprising 80 genera from 29 families, to provide an updated phylogenetic analysis of the infra-order Brachyura (“true crabs”). Our analyses support the subsection Potamoida within the Eubrachyura as the sister group to Thoracotremata. The family Panopeidae aligns with the family Xanthidae to form the Xanthoidea branch, which is supported by current morphological and genetic taxonomy. A unique gene arrangement termed ‘XanGO’ was identified for the panopeids and varies relative to other members of the subsection Heterotremata (within the Eubrachyura) via a transposition of the trnV gene. This gene arrangement is novel and is shared between several Xanthoidea species, including Etisus anaglyptus (hairy spooner crab), Atergatis floridus (brown egg crab), and Atergatis integerrimus (red egg crab), suggesting that it is a conserved gene arrangement within the Xanthoidea superfamily. Our study further reveals a need for taxonomic revision of some brachyuran groups, particularly the Sesarmidae. The inclusion of panopeid mitogenomes into the greater brachyuran phylogeny increases our understanding of crab evolution and higher level Eubrachyuran systematics.","PeriodicalId":55460,"journal":{"name":"Arthropod Systematics & Phylogeny","volume":null,"pages":null},"PeriodicalIF":1.5000,"publicationDate":"2021-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"4","resultStr":"{\"title\":\"Systematic assessment of the Panopeidae and broader Eubrachyura (Decapoda: Brachyura) using mitochondrial genomics\",\"authors\":\"Lucas A. Jennings, A. Blakeslee, K. McCoy, Donald C. Behringer, J. Bojko\",\"doi\":\"10.3897/asp.79.e70234\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Abstract\\n \\n This study provides a broad phylogenetic analysis for the Eubrachyura, with the inclusion of three new Panopeidae mitochondrial genomes: Eurypanopeus depressus (flatback mud crab) (15,854bp), Panopeus herbstii (Atlantic mud crab) (15,812bp) and Rhithropanopeus harrisii (Harris, or ‘white-fingered’ mud crab) (15,892bp). These new mitogenomes were analyzed alongside all available brachyuran mitochondrial genomes (n = 113), comprising 80 genera from 29 families, to provide an updated phylogenetic analysis of the infra-order Brachyura (“true crabs”). Our analyses support the subsection Potamoida within the Eubrachyura as the sister group to Thoracotremata. The family Panopeidae aligns with the family Xanthidae to form the Xanthoidea branch, which is supported by current morphological and genetic taxonomy. A unique gene arrangement termed ‘XanGO’ was identified for the panopeids and varies relative to other members of the subsection Heterotremata (within the Eubrachyura) via a transposition of the trnV gene. This gene arrangement is novel and is shared between several Xanthoidea species, including Etisus anaglyptus (hairy spooner crab), Atergatis floridus (brown egg crab), and Atergatis integerrimus (red egg crab), suggesting that it is a conserved gene arrangement within the Xanthoidea superfamily. Our study further reveals a need for taxonomic revision of some brachyuran groups, particularly the Sesarmidae. The inclusion of panopeid mitogenomes into the greater brachyuran phylogeny increases our understanding of crab evolution and higher level Eubrachyuran systematics.\",\"PeriodicalId\":55460,\"journal\":{\"name\":\"Arthropod Systematics & Phylogeny\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.5000,\"publicationDate\":\"2021-11-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"4\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Arthropod Systematics & Phylogeny\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.3897/asp.79.e70234\",\"RegionNum\":2,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENTOMOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Arthropod Systematics & Phylogeny","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.3897/asp.79.e70234","RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENTOMOLOGY","Score":null,"Total":0}
引用次数: 4

摘要

摘要本研究为真短尾目提供了一个广泛的系统发育分析,包括三个新的Panopeidae线粒体基因组:宽扁扁扁蛛(扁背泥蟹)(15854bp)、草斑扁蛛(大西洋泥蟹)。这些新的有丝分裂基因组与所有可用的brachyuran线粒体基因组(n=113)一起进行了分析,包括来自29个科的80个属,以提供Brachyura下目(“真正的螃蟹”)的最新系统发育分析。我们的分析支持Eubrachyura内的Potamoida亚群作为胸廓肌的姐妹群。Panopedae家族与Xanthidae家族结盟,形成Xanthoidea分支,这得到了当前形态学和遗传学分类学的支持。一种被称为“XanGO”的独特基因排列被鉴定用于全景动物,并通过trnV基因的转座相对于异吸虫亚群(Eubrachyura内)的其他成员而变化。这种基因排列是新颖的,在黄总科的几个物种之间是共享的,包括东方红螯蟹(Etisus anaglyptus)、花形黄螯蟹(Atergatis floridus)和红螯蟹,这表明它是黄总科中的一种保守基因排列。我们的研究进一步揭示了对一些短吻龙类群,特别是芝麻科进行分类学修订的必要性。将全景有丝分裂基因组纳入更大的短吻蟹系统发育中,增加了我们对螃蟹进化和更高水平的真短吻蟹分类学的理解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Systematic assessment of the Panopeidae and broader Eubrachyura (Decapoda: Brachyura) using mitochondrial genomics
Abstract This study provides a broad phylogenetic analysis for the Eubrachyura, with the inclusion of three new Panopeidae mitochondrial genomes: Eurypanopeus depressus (flatback mud crab) (15,854bp), Panopeus herbstii (Atlantic mud crab) (15,812bp) and Rhithropanopeus harrisii (Harris, or ‘white-fingered’ mud crab) (15,892bp). These new mitogenomes were analyzed alongside all available brachyuran mitochondrial genomes (n = 113), comprising 80 genera from 29 families, to provide an updated phylogenetic analysis of the infra-order Brachyura (“true crabs”). Our analyses support the subsection Potamoida within the Eubrachyura as the sister group to Thoracotremata. The family Panopeidae aligns with the family Xanthidae to form the Xanthoidea branch, which is supported by current morphological and genetic taxonomy. A unique gene arrangement termed ‘XanGO’ was identified for the panopeids and varies relative to other members of the subsection Heterotremata (within the Eubrachyura) via a transposition of the trnV gene. This gene arrangement is novel and is shared between several Xanthoidea species, including Etisus anaglyptus (hairy spooner crab), Atergatis floridus (brown egg crab), and Atergatis integerrimus (red egg crab), suggesting that it is a conserved gene arrangement within the Xanthoidea superfamily. Our study further reveals a need for taxonomic revision of some brachyuran groups, particularly the Sesarmidae. The inclusion of panopeid mitogenomes into the greater brachyuran phylogeny increases our understanding of crab evolution and higher level Eubrachyuran systematics.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Arthropod Systematics & Phylogeny
Arthropod Systematics & Phylogeny Agricultural and Biological Sciences-Insect Science
CiteScore
2.50
自引率
5.60%
发文量
26
审稿时长
12 weeks
期刊介绍: Arthropod Systematics & Phylogeny releases three times per year. Research fields covered are the taxonomy, morphology/anatomy, phylogeny (molecular or morphology-based), historical biogeography and palaeontology of arthropod taxa. Arthropod Systematics & Phylogeny is the successor of Entomologische Abhandlungen, formerly published by the Museum of Zoology Dresden, Germany.
期刊最新文献
New fossil stoneflies (Plecoptera: Arctoperlaria) from Australia testify ancient dispersal across Pangea Plant bugs with swollen antennae: a morphology-based phylogenetic analysis of Heterocapillus Wagner, 1960 and related genera (Hemiptera: Miridae: Phylinae) New insights into the phylogeny of Stephanidae (Hymenoptera: Apocrita), with a revision of the fossil species Two new subterranean Typhlonesticus (Araneae: Nesticidae) from the Alps with notes on their ecology, distribution and conservation On a taxonomic feature that has been overestimated in classification practice: an integrative taxonomic revision of Stephoblemmus Saussure, 1877 based on morphology and molecular phylogeny (Orthoptera: Grylloidea; Gryllidae; Gryllinae)
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1