Indramayu芒果(Mangifera indica L.)生物活性成分的分子对接果皮废弃物作为NS5B型丙型肝炎病毒(HCV)抑制剂

Gusnia Meilin Gholam, Mustika Luthfia, Iman Akhyar Firdausy
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引用次数: 1

摘要

背景:丙型肝炎由丙型肝炎病毒(HCV)感染引起。丙型肝炎病毒感染是慢性肝病的最大原因之一。约60-80%的急性丙型肝炎患者会发展为慢性丙型肝炎。目的:本研究旨在分析芒果皮化合物作为HCV NS5B抑制剂的潜力。方法:采用配体制备、理化药代动力学预测、蛋白结构制备、分子对接、数据分析、可视化等方法。结果:实验配体的结合自由能与参考配体接近,分别为芒果苷-7.862 kcal/mol、D-(+)-麦芽糖-6.453 kcal/mol、邻苯二甲酸二丁酯-6.326 kcal/mol、二β-D-果糖呋喃糖1,2′:2,3′-二酐-6.249 kcal/mol、16-十六烷基-1,2,4-三醇-5.476 kcal/mol、3,4,5-三羟基环己-1-烯-1-羧酸-5,360 kcal/mol、Trigonelline -4.905 kcal/mol、己醇-4.552 kcal/mol、α-葡萄糖七醇-4.403 kcal/mol。所有的测试配体都用氢键结合NS5B活性位点。此外,配体-受体复合物具有解离常数和氢键长度。结论:芒果苷是所有试验配体中最有潜力抑制NS5B型HCV的配体。
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Molecular Docking: Bioactive Compounds in Indramayu Mango (Mangifera indica L.) Peel Waste as NS5B Hepatitis C Virus (HCV) Inhibitor
Background: Hepatitis C is caused by hepatitis C virus (HCV) infection. HCV infection is one of the biggest causes of chronic liver disease. About 60-80% of patients with acute hepatitis C will develop chronic hepatitis C. Objective: This study aimed to analyze the potential of mango peel compounds as HCV NS5B inhibitors. Methods: The methods in this study are ligand preparation, physicochemical and pharmacokinetic predictions, protein structure preparation, molecular docking, data analysis, and visualization. Results: The results showed that the test ligands had binding free energies close to the reference ligands, namely Mangiferin -7.862 kcal/mol and respectively D-(+)-Maltose -6.453 kcal/mol, Dibutyl – phthalate -6.326 kcal/mol, bis-β-D-fructofuranose 1,2':2,3'-dianhydride -6.249 kcal/mol, 16-Heptadecyne-1,2,4-triol -5.476 kcal/mol, 3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid -5,360 kcal/mol, Trigonelline -4.905 kcal/mol, Hexitol -4.552 kcal/mol, α-Glucoheptitol -4.403 kcal/mol. All the test ligands bind the NS5B active site with hydrogen bonds. Furthermore, the ligand-receptor complex has a dissociation constant value and hydrogen bond length. Conclusion: The results showed that Mangiferin was the most potential ligand in inhibiting NS5B HCV of all the test ligands used.
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