人类macroPARPs结构域的NMR研究:hPARP14宏观结构域2在自由和ADPr结合状态下的1H, 15N和13C共振分配

IF 0.8 4区 生物学 Q4 BIOPHYSICS Biomolecular NMR Assignments Pub Date : 2022-09-15 DOI:10.1007/s12104-022-10110-6
Nikolaos K. Fourkiotis, Periklis Charalampous, Aikaterini C. Tsika, Konstantina P. Kravvariti, Christos Sideras-Bisdekis, Angelo Gallo, Georgios A. Spyroulias
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引用次数: 0

摘要

hPARP14是一种人类adp -核糖基转移酶(ART),与hPARP9和hPARP15一起属于macroPARPs家族。它包含三个宏域(MD)的串联,而每个宏域具有不同的性质。第一个,即MD1,与后面两个(MD2和MD3)相比,没有报道显示出对adp核糖(ADPr)的高结合亲和力。三种MDs均表现出α/β/α三明治状褶皱。MD2和MD3识别单adp核糖基化(MARylated)底物,但不识别多adp核糖基化(PARylated)底物,因此它们允许hPARP14结合其靶标,这些靶标可能通过其催化结构域(CD)被MARylated。hPARP14参与DNA损伤修复过程和针对SARS-CoV-2等病毒的免疫反应,SARS-CoV-2也含有MD折叠。此外,hPARP14与其他两个macroPARPs (hPARP9和hPARP15)一样,与许多类型的癌症(如b侵袭性淋巴瘤和肉瘤)有关,使其MDs成为潜在的重要药物靶点。本文报道了hPARP14 MD2在自由和ADPr结合状态下完整的核磁共振主链和侧链分配(1H, 13C, 15N),以及基于核磁共振化学位移的二级结构元素预测。这是首次报道的hPARP宏观结构域的核磁共振研究,为通过核磁共振筛选可能改变hPARP14与其底物相互作用影响其功能的化合物铺平了道路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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NMR study of human macroPARPs domains: 1H, 15N and 13C resonance assignment of hPARP14 macro domain 2 in the free and the ADPr bound state

hPARP14 is a human ADP-ribosyl-transferase (ART) that belongs to the macroPARPs family, together with hPARP9 and hPARP15. It contains a tandem of three macro domains (MD) while each of them has different properties. The first one, namely MD1, has not been reported to exhibit a high binding affinity for ADP-ribose (ADPr) in contrast to the following two (MD2 and MD3). All three MDs exhibit an α/β/α sandwich-like fold as reported by the deposited crystallographic structures. MD2 and MD3 recognize mono-ADP-ribosylated (MARylated) but not poly-ADP-ribosylated (PARylated) substrates and thus they allow hPARP14 to bind its targets, which can be potentially MARylated by its catalytic domain (CD). hPARP14 participates in DNA damage repair process and immune response against viruses like SARS-CoV-2, which also harbors an MD fold. Furthermore, hPARP14 like the other two macroPARPs (hPARP9 and hPARP15), is implicated in numerous types of cancer, such as B-aggressive lymphoma and sarcoma, rendering its MDs as potential important drug targets. Herein, we report the complete NMR backbone and side chain assignment (1H, 13C, 15N) of hPARP14 MD2 in the free and ADPr bound states and the NMR chemical shift-based prediction of its secondary structure elements. This is the first reported NMR study of a hPARP macro domain, paving the way to screen by NMR chemical compounds which may alter the ability of hPARP14 to interact with its substrates affecting its function.

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来源期刊
Biomolecular NMR Assignments
Biomolecular NMR Assignments 生物-光谱学
CiteScore
1.70
自引率
11.10%
发文量
59
审稿时长
6-12 weeks
期刊介绍: Biomolecular NMR Assignments provides a forum for publishing sequence-specific resonance assignments for proteins and nucleic acids as Assignment Notes. Chemical shifts for NMR-active nuclei in macromolecules contain detailed information on molecular conformation and properties. Publication of resonance assignments in Biomolecular NMR Assignments ensures that these data are deposited into a public database at BioMagResBank (BMRB; http://www.bmrb.wisc.edu/), where they are available to other researchers. Coverage includes proteins and nucleic acids; Assignment Notes are processed for rapid online publication and are published in biannual online editions in June and December.
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