{"title":"自由基间相互作用和清除自由基对磁敏感性的影响:提出的自由基对的自旋动力学模拟","authors":"Gongyi Hong, Ruth Pachter","doi":"10.1007/s00249-023-01630-7","DOIUrl":null,"url":null,"abstract":"<div><p>Although the magnetosensitivity to weak magnetic fields, such as the geomagnetic field, which was exhibited by radical pairs that are potentially responsible for avian navigation, has been previously investigated by spin dynamics simulations, understanding this behavior for proposed radical pairs in other species is limited. These include, for example, radical pairs formed in the single-cell green alga <i>Chlamydomonas reinhardtii</i> (<i>Cra</i>CRY) and in <i>Columba livia</i> (<i>Cl</i>CRY4). In addition, the radical pair of FADH<sup>•</sup> with the one-electron reduced cyclobutane thymine dimer that was shown to be sensitive to weak magnetic fields has been of interest. In this work, we investigated the directional magnetosensitivity of these radical pairs to a weak magnetic field by spin dynamics simulations. We find significant reduction in the magnetosensitivity by inclusion of dipolar and exchange interactions, which can be mitigated by a scavenging radical, as demonstrated for the [FAD<sup>•−</sup> TyrD<sup>•</sup>] radical pair in <i>Cra</i>CRY, but not for the [FADH<sup>•</sup> T□T<sup>•−</sup>] radical pair because of the large exchange coupling. The directional magnetosensitivity of the <i>Cl</i>CRY4 [FAD<sup>•−</sup> TyrE<sup>•</sup>] radical pair can survive this adverse effect even without the scavenging reaction, possibly motivating further experimental exploration.</p></div>","PeriodicalId":548,"journal":{"name":"European Biophysics Journal","volume":"52 1-2","pages":"27 - 37"},"PeriodicalIF":2.2000,"publicationDate":"2023-02-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Effects of inter-radical interactions and scavenging radicals on magnetosensitivity: spin dynamics simulations of proposed radical pairs\",\"authors\":\"Gongyi Hong, Ruth Pachter\",\"doi\":\"10.1007/s00249-023-01630-7\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Although the magnetosensitivity to weak magnetic fields, such as the geomagnetic field, which was exhibited by radical pairs that are potentially responsible for avian navigation, has been previously investigated by spin dynamics simulations, understanding this behavior for proposed radical pairs in other species is limited. These include, for example, radical pairs formed in the single-cell green alga <i>Chlamydomonas reinhardtii</i> (<i>Cra</i>CRY) and in <i>Columba livia</i> (<i>Cl</i>CRY4). In addition, the radical pair of FADH<sup>•</sup> with the one-electron reduced cyclobutane thymine dimer that was shown to be sensitive to weak magnetic fields has been of interest. In this work, we investigated the directional magnetosensitivity of these radical pairs to a weak magnetic field by spin dynamics simulations. We find significant reduction in the magnetosensitivity by inclusion of dipolar and exchange interactions, which can be mitigated by a scavenging radical, as demonstrated for the [FAD<sup>•−</sup> TyrD<sup>•</sup>] radical pair in <i>Cra</i>CRY, but not for the [FADH<sup>•</sup> T□T<sup>•−</sup>] radical pair because of the large exchange coupling. The directional magnetosensitivity of the <i>Cl</i>CRY4 [FAD<sup>•−</sup> TyrE<sup>•</sup>] radical pair can survive this adverse effect even without the scavenging reaction, possibly motivating further experimental exploration.</p></div>\",\"PeriodicalId\":548,\"journal\":{\"name\":\"European Biophysics Journal\",\"volume\":\"52 1-2\",\"pages\":\"27 - 37\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2023-02-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"European Biophysics Journal\",\"FirstCategoryId\":\"2\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00249-023-01630-7\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOPHYSICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"European Biophysics Journal","FirstCategoryId":"2","ListUrlMain":"https://link.springer.com/article/10.1007/s00249-023-01630-7","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOPHYSICS","Score":null,"Total":0}
Effects of inter-radical interactions and scavenging radicals on magnetosensitivity: spin dynamics simulations of proposed radical pairs
Although the magnetosensitivity to weak magnetic fields, such as the geomagnetic field, which was exhibited by radical pairs that are potentially responsible for avian navigation, has been previously investigated by spin dynamics simulations, understanding this behavior for proposed radical pairs in other species is limited. These include, for example, radical pairs formed in the single-cell green alga Chlamydomonas reinhardtii (CraCRY) and in Columba livia (ClCRY4). In addition, the radical pair of FADH• with the one-electron reduced cyclobutane thymine dimer that was shown to be sensitive to weak magnetic fields has been of interest. In this work, we investigated the directional magnetosensitivity of these radical pairs to a weak magnetic field by spin dynamics simulations. We find significant reduction in the magnetosensitivity by inclusion of dipolar and exchange interactions, which can be mitigated by a scavenging radical, as demonstrated for the [FAD•− TyrD•] radical pair in CraCRY, but not for the [FADH• T□T•−] radical pair because of the large exchange coupling. The directional magnetosensitivity of the ClCRY4 [FAD•− TyrE•] radical pair can survive this adverse effect even without the scavenging reaction, possibly motivating further experimental exploration.
期刊介绍:
The journal publishes papers in the field of biophysics, which is defined as the study of biological phenomena by using physical methods and concepts. Original papers, reviews and Biophysics letters are published. The primary goal of this journal is to advance the understanding of biological structure and function by application of the principles of physical science, and by presenting the work in a biophysical context.
Papers employing a distinctively biophysical approach at all levels of biological organisation will be considered, as will both experimental and theoretical studies. The criteria for acceptance are scientific content, originality and relevance to biological systems of current interest and importance.
Principal areas of interest include:
- Structure and dynamics of biological macromolecules
- Membrane biophysics and ion channels
- Cell biophysics and organisation
- Macromolecular assemblies
- Biophysical methods and instrumentation
- Advanced microscopics
- System dynamics.