基于多数据库综合分析SORT1及其共表达基因在肝细胞癌中的预后潜力及机制

IF 0.4 Q4 MEDICINE, RESEARCH & EXPERIMENTAL Precision Medical Sciences Pub Date : 2022-11-02 DOI:10.1002/prm2.12084
Minjie Lin, Mengying Zhu, Tingqiu Ge, Naiying Lu, Xiling Fu, Jia‐song Chang
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引用次数: 0

摘要

SORT1异常表达在多种癌症中都有报道。然而,SORT1在肝细胞癌(HCC)中的表达和功能仍有待探索。本研究旨在探讨SORT1在HCC中的表达和功能,并鉴定其共表达基因。我们的分析使用了各种基因表达数据库。我们发现SORT1在HCC肿瘤组织中上调,SORT1高表达水平与较差的总生存期(OS)相关。使用LinkedOmics对SORT1及其潜在调控因子的共表达基因进行了研究。metscape对共表达基因的功能网络分析显示,它们参与了异常脂质代谢、AMPK信号通路和PPAR信号通路,这些信号通路都与HCC的发病密切相关。此外,通过Cytoscape分析共表达基因,确定其中心基因,包括CYB5A、CYP2C9、CYP3A5、CYP4A11和POR。通过GEPIA下调HCC肿瘤组织中CYP2C9、CYP3A5和CYP4A11 mRNA的表达水平。高枢纽基因表达水平与HCC中更好的OS和无进展生存期(PFS)相关。采用TIMER检测SORT1和hub基因与肿瘤免疫浸润的相关性。SORT1和hub基因的表达与不同免疫细胞的浸润水平呈正相关。我们的研究结果提示SORT1高表达水平预示HCC预后不良,其可能机制与免疫相关。
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Prognostic potential and mechanism of SORT1 and its co‐expressed genes in hepatocellular carcinoma based on integrative analysis of multiple database
Abnormal SORT1 expression has been reported in various cancers. However, the expression and function of SORT1 in hepatocellular carcinoma (HCC) remain to be explored. This study aims to explore the expression and function of SORT1 and to identify its co‐expressed genes in HCC. Various gene expression databases were applied in our analysis. We found SORT1 was up‐regulated in HCC tumor tissues and high SORT1 expression level was associated with worse overall survival (OS). Co‐expressed genes with SORT1 and its potential regulators were explored using LinkedOmics. Functional network analysis of co‐expressed genes by Metascape revealed that they participated in aberrant lipid metabolism, AMPK signaling pathway, and PPAR signaling pathway which were all strongly linked to the pathogenesis of HCC. In addition, co‐expression genes were analyzed by Cytoscape to identify their hub genes, which included CYB5A, CYP2C9, CYP3A5, CYP4A11, and POR. The mRNA expression level of CYP2C9, CYP3A5, and CYP4A11 were down‐regulated in HCC tumor tissues via GEPIA. High hub genes expression level was associated with better OS and progression free survival (PFS) in HCC. The correlations between SORT1 and hub genes with cancer immune infiltrates were investigated by TIMER. Notably, SORT1 and hub genes expression was positively correlated with infiltrating levels of different immune cells. Our findings suggested that high SORT1 expression level predicted dismal prognosis in HCC and its possible mechanism was immune‐related.
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来源期刊
Precision Medical Sciences
Precision Medical Sciences MEDICINE, RESEARCH & EXPERIMENTAL-
自引率
0.00%
发文量
33
审稿时长
15 weeks
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