利用生物信息学分析发现免疫球蛋白耐药川崎病潜在的新生物标志物

Luoyi Hu
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引用次数: 0

摘要

静脉免疫球蛋白(IVIG)抵抗性川崎病(KD)是一种复杂的疾病,可引起多系统损伤。诱发KD的致病因素尚不清楚。目前的研究重点是利用综合分析方法鉴定抗ivig KD的潜在新型生物标志物。GSE18606数据集中纳入了8个抗ivig的KD样本和12个对ivig敏感的KD样本。微阵列数据线性模型(Linear Model for Microarray Data, LIMMA)鉴定出504个差异表达基因(DEGs),通过加权基因共表达网络分析(WGCNA)将抗ivig的KD样本与ivig敏感的KD样本进行比较,鉴定出17个模块。共同基因(CG)是deg和最重要模块中基因的交集。功能富集分析显示,CGs主要富集于TNF信号通路和nf - κ B信号通路。其中10个基因因其高度连通性而被选为枢纽基因(KLF1、AHSP、HBQ1、HBA2、HBA1、EPB42、GYPB、UBB、KRT1和BPIFB2)。
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Uncovering Potential Novel Biomarkers in Immunoglobulin-Resistant Kawasaki Disease Using Bioinformatics Analysis
Intravenous immunoglobulin (IVIG)-resistant Kawasaki disease (KD) is a complicated disorder, which can induce multiple-system damage. The pathogenic factor inducing KD remains unclear. The present study focused on identifying potential novel biomarkers for IVIG-resistant KD using integrated analyses. Eight IVIG-resistant KD samples and twelve IVIG-sensitive KD samples were included in the GSE18606 dataset. A Linear Model for Microarray Data (LIMMA) identified 504 differentially expressed genes (DEGs), An IVIG-resistant KD sample was compared with an IVIG-sensitive KD sample to identify 17 modules through weighted gene co-expression network analysis (WGCNA). A common gene (CG) is the intersection of DEGs and genes in the most significant module. Analysis of functional enrichment revealed that CGs were mainly enriched in TNF signaling pathways and NF-kappa B signaling pathways. Ten of these genes were selected as hub genes because of their high degree of connectivity (KLF1, AHSP, HBQ1, HBA2, HBA1, EPB42, GYPB, UBB, KRT1 and BPIFB2).
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