基于泰国猪卵巢部分VP2基因的猪细小病毒1型分子特征分析

Q3 Veterinary Veterinary Integrative Sciences Pub Date : 2022-02-09 DOI:10.12982/vis.2022.035
Prayuth Saekhow, Chayaphon Sriphannam, P. Yamsakul
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引用次数: 0

摘要

猪细小病毒1 (PPV1)是猪生殖疾病的病原体,特别是在未出生的后备母猪和母猪中。本研究旨在研究VP2基因部分核苷酸序列的普遍性和遗传多样性,并比较影响相关生物学特性的氨基酸残基的替代。采用聚合酶链反应(PCR)检测病毒基因组,发现PPV1的患病率为12%(12/100)。通过系统发育分析确定VP2基因部分核苷酸序列的遗传多样性,表明泰国ppv1在系统发育树上被分配到一个单一的簇。通过比较12株泰国ppv1、Kresse菌株(替代致病菌株)和NADL-2菌株(替代非致病菌株)在VP2衣壳蛋白378、383、365和436处影响生物学特性的氨基酸残基的取代。结果表明,12株泰国PPV2s中378、383和436个氨基酸残基的取代与Kresse菌株相同。在12个泰国ppv1中,有436个氨基酸残基的替换与体内已证实的毒力菌株相似。此外,通过替换320个VP2衣壳蛋白的氨基酸残基,发现7个泰国ppv1与异亮氨酸ppv1相关,与两个替代菌株相同,而5个泰国ppv1与苏氨酸相关。这一结果与存放在GenBank中的结果相似。我们的数据表明,从清迈饲养的猪卵巢中分离出的泰国ppv1可能起源于克雷斯菌株。根据在VP2衣壳蛋白320的取代氨基酸残基中发生的VP2衣壳蛋白的变化,确定在该区域发现的病毒与在其他区域发现的病毒相似。这可能是因为病毒已经适应了逃避动物的免疫系统。
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Molecular characterization of porcine parvovirus 1 based on partial VP2 gene in the ovaries of Thai pigs
Porcine parvovirus 1 (PPV1) is the causative agent of swine reproductive disease, particularly in naive gilts and sows. This study aimed to investigate the prevalence and genetic diversity of the partial nucleotide sequence of the VP2 gene and to compare the substitution of amino acid residues that affect relevant biological properties. The prevalence of PPV1 was found to be 12% (12/100) when the viral genome was detected using polymerase chain reaction (PCR). Determination of the genetic diversity of a partial nucleotide sequence of the VP2 gene through phylogenetic analysis indicated that a single cluster of Thai PPV1s was allocated on the phylogenetic tree. According to a comparison of the substitution of amino acid residues that affected the biological properties at 378, 383, 365, and 436 of the VP2 capsid protein between the 12 Thai PPV1s, the Kresse strain (a surrogate pathogenic strain), and the NADL-2 strain (a surrogate nonpathogenic strain). It was determined that the substitution of amino acid residues at 378, 383, and 436 of 12 Thai PPV2s was identical to those of the Kresse strains. The substitution of amino acid residues at 436 of the 12 Thai PPV1s was similar to that of a proven virulent strain in vivo. Additionally, substituting amino acid residue at 320 of the VP2 capsid protein revealed that seven Thai PPV1s were associated with isoleucine PPV1s and identical to that of both surrogate strains, whereas five Thai PPV1s were associated with threonine. This outcome was similar to what had been deposited in GenBank. Our data suggest that Thai PPV1s isolated from the ovaries of pigs raised in Chiang Mai may have originated from the Kresse strains. Based on a change of VP2 capsid protein that occurred amongst the substitution amino acid residue at 320 of the VP2 capsid protein, viruses found in this region were determined to be similar to those found in other areas. This was likely because the viruses had adapted to evade the immune systems of animals.
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来源期刊
Veterinary Integrative Sciences
Veterinary Integrative Sciences Veterinary-Veterinary (all)
CiteScore
1.20
自引率
0.00%
发文量
9
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