{"title":"联合国教科文组织世界遗产中心孙德尔本斯岛的半足虫(科:半足虫科)的dna条形码揭示了其神秘的多样性和重新评价","authors":"Ananya Mazumder , Bishal Dhar , Sankar Kumar Ghosh","doi":"10.1016/j.angen.2022.200127","DOIUrl":null,"url":null,"abstract":"<div><p>Crabs are one of the most diversified crustaceans among metazoans, from both morphological and ecological point of view. Among them, ghost crabs (Genus <span><em>Ocypode</em></span>; Family <em>Ocypodidae</em><span>) play an important role in the tropical and sub-tropical intertidal ecosystems. Due to a lack of comprehensive data, their cryptic behaviour, mimicry or camouflage, and a lack of formal taxonomic documentation, identification of this group is often difficult. Molecular taxonomy can help to overcome these barriers by assisting in species identification. The present study is the first large scale attempt to identify ghost crabs using DNA barcodes<span>, which are now available globally, for 16 morphospecies in the genus </span></span><em>Ocypode</em><span>. A total of 164 barcodes were analysed for species delimitation that are available globally including specimens collected from the Indian Sundarbans. Various species delimitation methods (K2P, NJ, Bayesian supported PTP and Bayesian tree) revealed a total of 19 MOTUs for 16 distinct species where multiple MOTUs were observed in 3 species with inconsistencies in genetic distances and tree topologies. We recognised cryptic diversity in </span><em>Ocypode macrocera, O. platytarsis</em> and <em>O. quadrata</em> with intraspecies distances greater than the species delimitation threshold of 0.053 ± 0.01. The current study also concluded that <em>O</em>. <em>platytarsis</em> and <em>O. brevicornis</em> are two distinct species, putting an end to the debate over their species synonymy. Furthermore, our Bayesian analysis confirmed the retraction of the genus <em>Hoplocypode</em> specified only for <em>O. occidentalis</em>. As a result, the current research added a new dimension to ghost crab taxonomy by contributing to the detection of cryptic species, thus speculating the possibility of new species and reaffirming the effectiveness of the DNA barcoding while demanding enrichment of the global database for comprehensive species identification and extensive approach of molecular taxonomy as well as morphological interventions in solving taxonomic puzzles.</p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"25 ","pages":"Article 200127"},"PeriodicalIF":0.0000,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"DNA-barcoding reveals cryptic diversity and re-evaluation of Ocypode (family: Ocypodidae) from the Sundarbans - UNESCO World Heritage Centre\",\"authors\":\"Ananya Mazumder , Bishal Dhar , Sankar Kumar Ghosh\",\"doi\":\"10.1016/j.angen.2022.200127\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Crabs are one of the most diversified crustaceans among metazoans, from both morphological and ecological point of view. Among them, ghost crabs (Genus <span><em>Ocypode</em></span>; Family <em>Ocypodidae</em><span>) play an important role in the tropical and sub-tropical intertidal ecosystems. Due to a lack of comprehensive data, their cryptic behaviour, mimicry or camouflage, and a lack of formal taxonomic documentation, identification of this group is often difficult. Molecular taxonomy can help to overcome these barriers by assisting in species identification. The present study is the first large scale attempt to identify ghost crabs using DNA barcodes<span>, which are now available globally, for 16 morphospecies in the genus </span></span><em>Ocypode</em><span>. A total of 164 barcodes were analysed for species delimitation that are available globally including specimens collected from the Indian Sundarbans. Various species delimitation methods (K2P, NJ, Bayesian supported PTP and Bayesian tree) revealed a total of 19 MOTUs for 16 distinct species where multiple MOTUs were observed in 3 species with inconsistencies in genetic distances and tree topologies. We recognised cryptic diversity in </span><em>Ocypode macrocera, O. platytarsis</em> and <em>O. quadrata</em> with intraspecies distances greater than the species delimitation threshold of 0.053 ± 0.01. The current study also concluded that <em>O</em>. <em>platytarsis</em> and <em>O. brevicornis</em> are two distinct species, putting an end to the debate over their species synonymy. Furthermore, our Bayesian analysis confirmed the retraction of the genus <em>Hoplocypode</em> specified only for <em>O. occidentalis</em>. As a result, the current research added a new dimension to ghost crab taxonomy by contributing to the detection of cryptic species, thus speculating the possibility of new species and reaffirming the effectiveness of the DNA barcoding while demanding enrichment of the global database for comprehensive species identification and extensive approach of molecular taxonomy as well as morphological interventions in solving taxonomic puzzles.</p></div>\",\"PeriodicalId\":7893,\"journal\":{\"name\":\"Animal Gene\",\"volume\":\"25 \",\"pages\":\"Article 200127\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Animal Gene\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2352406522000045\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Animal Gene","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352406522000045","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
DNA-barcoding reveals cryptic diversity and re-evaluation of Ocypode (family: Ocypodidae) from the Sundarbans - UNESCO World Heritage Centre
Crabs are one of the most diversified crustaceans among metazoans, from both morphological and ecological point of view. Among them, ghost crabs (Genus Ocypode; Family Ocypodidae) play an important role in the tropical and sub-tropical intertidal ecosystems. Due to a lack of comprehensive data, their cryptic behaviour, mimicry or camouflage, and a lack of formal taxonomic documentation, identification of this group is often difficult. Molecular taxonomy can help to overcome these barriers by assisting in species identification. The present study is the first large scale attempt to identify ghost crabs using DNA barcodes, which are now available globally, for 16 morphospecies in the genus Ocypode. A total of 164 barcodes were analysed for species delimitation that are available globally including specimens collected from the Indian Sundarbans. Various species delimitation methods (K2P, NJ, Bayesian supported PTP and Bayesian tree) revealed a total of 19 MOTUs for 16 distinct species where multiple MOTUs were observed in 3 species with inconsistencies in genetic distances and tree topologies. We recognised cryptic diversity in Ocypode macrocera, O. platytarsis and O. quadrata with intraspecies distances greater than the species delimitation threshold of 0.053 ± 0.01. The current study also concluded that O. platytarsis and O. brevicornis are two distinct species, putting an end to the debate over their species synonymy. Furthermore, our Bayesian analysis confirmed the retraction of the genus Hoplocypode specified only for O. occidentalis. As a result, the current research added a new dimension to ghost crab taxonomy by contributing to the detection of cryptic species, thus speculating the possibility of new species and reaffirming the effectiveness of the DNA barcoding while demanding enrichment of the global database for comprehensive species identification and extensive approach of molecular taxonomy as well as morphological interventions in solving taxonomic puzzles.
Animal GeneAgricultural and Biological Sciences-Insect Science
自引率
0.00%
发文量
16
期刊介绍:
Gene Reports publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses. Gene Reports strives to be a very diverse journal and topics in all fields will be considered for publication. Although not limited to the following, some general topics include: DNA Organization, Replication & Evolution -Focus on genomic DNA (chromosomal organization, comparative genomics, DNA replication, DNA repair, mobile DNA, mitochondrial DNA, chloroplast DNA). Expression & Function - Focus on functional RNAs (microRNAs, tRNAs, rRNAs, mRNA splicing, alternative polyadenylation) Regulation - Focus on processes that mediate gene-read out (epigenetics, chromatin, histone code, transcription, translation, protein degradation). Cell Signaling - Focus on mechanisms that control information flow into the nucleus to control gene expression (kinase and phosphatase pathways controlled by extra-cellular ligands, Wnt, Notch, TGFbeta/BMPs, FGFs, IGFs etc.) Profiling of gene expression and genetic variation - Focus on high throughput approaches (e.g., DeepSeq, ChIP-Seq, Affymetrix microarrays, proteomics) that define gene regulatory circuitry, molecular pathways and protein/protein networks. Genetics - Focus on development in model organisms (e.g., mouse, frog, fruit fly, worm), human genetic variation, population genetics, as well as agricultural and veterinary genetics. Molecular Pathology & Regenerative Medicine - Focus on the deregulation of molecular processes in human diseases and mechanisms supporting regeneration of tissues through pluripotent or multipotent stem cells.