基于279个与肺功能相关信号的加权遗传风险评分预测慢性阻塞性肺疾病

IF 2.7 4区 医学 Q2 GENETICS & HEREDITY Genes and Environment Pub Date : 2018-09-15 DOI:10.1183/13993003.CONGRESS-2018.OA2188
L. Wain, N. Shrine, A. Guyatt, V. Jackson, A. Erzurumluoglu, C. Batini, N. Reeve, B. Hobbs, M. Cho, D. Strachan, A. Morris, I. Hall, M. Tobin
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引用次数: 3

摘要

肺功能测量用于COPD的诊断和分级。我们之前已经表明,在大型普通人群队列中分析肺功能的遗传决定因素,可以提供COPD风险的信息,是病例对照研究的有力替代方案。我们之前报道了一项基于当时报道的与肺功能相关的95种变异的未加权遗传风险评分与COPD的显著关联(P=5.65x10-36)。我们对来自UK Biobank和SpiroMeta联盟的404,165名个体的肺活量测定进行了全基因组关联分析,以确定新的信号(P)。我们确定了139个新的信号,我们将这些信号与先前报道的140个信号结合起来构建加权风险评分,然后在5991例COPD病例和3378例对照的综合分析中测试了与COPD的相关性。279个信号中每个个体的风险等位基因的平均(SD)数为295(10.4)。加权风险评分与COPD风险显著相关(P=6.64 × 10-63),风险评分的每个标准差(约12个风险等位基因)OR为1.55(95%置信区间1.47,1.63)。我们的研究结果表明,增加加权风险评分中的信号数量可以提高COPD的预测能力,并提供新的生物学见解。
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A weighted genetic risk score based on 279 signals of association with lung function predicts Chronic Obstructive Pulmonary Disease
Lung function measures are used in diagnosis and grading of COPD. We have previously shown that the genetic determinants of lung function, analysed in large general population cohorts, are informative about risk of COPD and a powerful alternative to case-control studies. We previously reported a significant association (P=5.65x10-36) with COPD for an unweighted genetic risk score based on the 95 variants reported as associated with lung function at that time. We undertook genome-wide association analyses of spirometry in 404,165 individuals from UK Biobank and the SpiroMeta consortium to identify novel signals (P We identified 139 novel signals which we combined with the 140 previously reported signals to construct a weighted risk score that was then tested for association with COPD in a combined analysis of 5991 COPD cases and 3378 controls. The mean (SD) number of risk alleles per individual across the 279 signals was 295 (10.4). The weighted risk score was significantly associated with risk of COPD (P=6.64x10-63), with an OR of 1.55 (95% confidence intervals 1.47, 1.63) for each standard deviation of the risk score (approximately 12 risk alleles). Our findings show that increasing the number of signals in a weighted risk score increases predictive power for COPD, and provides new biological insight.
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来源期刊
Genes and Environment
Genes and Environment Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
4.00
自引率
0.00%
发文量
24
审稿时长
27 weeks
期刊介绍: Genes and Environment is an open access, peer-reviewed journal that aims to accelerate communications among global scientists working in the field of genes and environment. The journal publishes articles across a broad range of topics including environmental mutagenesis and carcinogenesis, environmental genomics and epigenetics, molecular epidemiology, genetic toxicology and regulatory sciences. Topics published in the journal include, but are not limited to, mutagenesis and anti-mutagenesis in bacteria; genotoxicity in mammalian somatic cells; genotoxicity in germ cells; replication and repair; DNA damage; metabolic activation and inactivation; water and air pollution; ROS, NO and photoactivation; pharmaceuticals and anticancer agents; radiation; endocrine disrupters; indirect mutagenesis; threshold; new techniques for environmental mutagenesis studies; DNA methylation (enzymatic); structure activity relationship; chemoprevention of cancer; regulatory science. Genetic toxicology including risk evaluation for human health, validation studies on testing methods and subjects of guidelines for regulation of chemicals are also within its scope.
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