K. Pekmez, M. Kaplan, A. A. Çağırgan, F. Arslan, B. Kafa, G. Kalaycı
{"title":"土耳其海参淋巴囊肿病病毒的分子特征","authors":"K. Pekmez, M. Kaplan, A. A. Çağırgan, F. Arslan, B. Kafa, G. Kalaycı","doi":"10.48045/001c.38086","DOIUrl":null,"url":null,"abstract":"Lymphocystis disease is a common, chronic and benign infection of fish. The disease has a worldwide distribution and has been reported from more than 125 marine and freshwater sites. In this study, molecular diagnosis and characterisation of Lymphocystis Disease Virus were performed from samples collected from sea bream fry showing lymphocystis disease symptoms in a farm located in the Aegean Sea. As a result of the phylogenetic analysis, the virus was classified as genotype VII. According to the similarity of nucleotide sequence, SA1.ETun.2011 virus reported from Tunisia was the closest related virus. The rate of amino acid substitution between genotypes was quite high, while amongst the genotype VII isolates substitution rates were low. When the similarity between the genotypes was investigated using the nucleotide sequences, the closest and most distant genotypes to the genotype VII were V and I, respectively.","PeriodicalId":55306,"journal":{"name":"Bulletin of the European Association of Fish Pathologists","volume":null,"pages":null},"PeriodicalIF":0.3000,"publicationDate":"2022-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Molecular characterisation of Lymphocystis Disease Virus detected from Sea Bream in Turkey\",\"authors\":\"K. Pekmez, M. Kaplan, A. A. Çağırgan, F. Arslan, B. Kafa, G. Kalaycı\",\"doi\":\"10.48045/001c.38086\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Lymphocystis disease is a common, chronic and benign infection of fish. The disease has a worldwide distribution and has been reported from more than 125 marine and freshwater sites. In this study, molecular diagnosis and characterisation of Lymphocystis Disease Virus were performed from samples collected from sea bream fry showing lymphocystis disease symptoms in a farm located in the Aegean Sea. As a result of the phylogenetic analysis, the virus was classified as genotype VII. According to the similarity of nucleotide sequence, SA1.ETun.2011 virus reported from Tunisia was the closest related virus. The rate of amino acid substitution between genotypes was quite high, while amongst the genotype VII isolates substitution rates were low. When the similarity between the genotypes was investigated using the nucleotide sequences, the closest and most distant genotypes to the genotype VII were V and I, respectively.\",\"PeriodicalId\":55306,\"journal\":{\"name\":\"Bulletin of the European Association of Fish Pathologists\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.3000,\"publicationDate\":\"2022-10-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Bulletin of the European Association of Fish Pathologists\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.48045/001c.38086\",\"RegionNum\":4,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"FISHERIES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bulletin of the European Association of Fish Pathologists","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.48045/001c.38086","RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"FISHERIES","Score":null,"Total":0}
Molecular characterisation of Lymphocystis Disease Virus detected from Sea Bream in Turkey
Lymphocystis disease is a common, chronic and benign infection of fish. The disease has a worldwide distribution and has been reported from more than 125 marine and freshwater sites. In this study, molecular diagnosis and characterisation of Lymphocystis Disease Virus were performed from samples collected from sea bream fry showing lymphocystis disease symptoms in a farm located in the Aegean Sea. As a result of the phylogenetic analysis, the virus was classified as genotype VII. According to the similarity of nucleotide sequence, SA1.ETun.2011 virus reported from Tunisia was the closest related virus. The rate of amino acid substitution between genotypes was quite high, while amongst the genotype VII isolates substitution rates were low. When the similarity between the genotypes was investigated using the nucleotide sequences, the closest and most distant genotypes to the genotype VII were V and I, respectively.
期刊介绍:
The Bulletin of the EAFP is an international peer-reviewed journal that publishes concise papers which merit rapid publication by virtue of their interest in the field of fish and shellfish pathology. Preliminary observations or partial studies are also acceptable, if adequately supported by experimental details. Short reviews, methodology papers and papers proposing alternative hypotheses based on previous data can be considered.