使用各种数据库鉴定不同人群中作为严重急性呼吸系统综合征冠状病毒2受体的血管紧张素转换酶2 SNPs的基因表达位置

Q4 Environmental Science Indonesian Journal of Biotechnology Pub Date : 2021-06-28 DOI:10.22146/ijbiotech.63260
D. Perwitasari, R. Maliza, B. Murti, H. Dania, Athika Darumas Putri
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引用次数: 0

摘要

世界卫生组织(世界卫生组织)宣布,严重急性呼吸系统综合征冠状病毒2型(SARS冠状病毒2型)和冠状病毒病(COVID-19)被视为全球大流行。据报道,几乎每个国家的患者人数都在迅速增加,死亡率也在不断上升。患者人数的增长失控可能是由于治疗选择和疫苗可用性以及SARS‐CoV‐2的不明靶点等原因。先前的研究表明,SARS‐CoV‐2的分子靶标类似于SARS(2003),即血管紧张素转化酶‐2(ACE‐2)。因此,ACE‐2的测定可能丰富现有信息,并有助于开发针对SARS‐CoV‐2的药物。本研究旨在筛选ACE-2基因的表达及其与严重急性呼吸系统综合征冠状病毒2型SNP变异类型的关系。我们使用强大的数据库,如GTEx门户、HaploReg、1000 Genome和Ensembl,探索了一系列观察结果,以鉴定ACE‐2的基因变体。我们发现ACE‐2在睾丸和小肠中高度表达,而在淋巴细胞中观察到其最低水平。随后,我们观察到17个基因变体含有可能破坏蛋白质水平的错义突变。在这些基因中,单核苷酸多态性(SNP)rs370187012的损伤水平得分最高,而SNP rs4646116的影响最低。在欧洲人群中观察到C等位基因的最高频率(1%)。除了显示ACE‐2在几个器官中表达外,我们还得出结论,ACE‐2基因变异可以在非洲、美国、东南亚和东亚以及欧洲人群中发现。ACE‐2的多态性影响ACE‐2蛋白结构以及ACE‐2受体与SARS‐CoV‐2的S蛋白的结合能力。
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Identification of gene expression location of angiotensin‐converting enzyme‐2 SNPs as a receptor for SARS‐CoV‐2 in different populations by using various databases
The World Health Organization (WHO) has announced that Severe Acute Respiratory Syndrome Coronavirus‐2 (SARS‐CoV‐2) and Coronavirus disease (COVID‐19) is considered a worldwide pandemic. Rapidly rising numbers of patients have been reported in almost every country, along with the growing mortality rates. Uncontrolled growth in patient numbers may be due to reasons such as treatment options and vaccine availabilities and unidentified targets of SARS‐CoV‐2. Previous study has revealed that the molecular target of SARS‐CoV‐2 is analogous to SARS (2003), i.e. angiotensin‐converting enzyme‐2 (ACE‐2). Therefore, the determination of ACE‐2 may enrich existing information and facilitate development of drugs targeted toward SARS‐CoV‐2. This study aims to screen the expression of ACE‐2 genes and their relationship to the types of SNP variants in SARS‐CoV‐2. We explored a series of observations using powerful databases, e.g. GTEx portal, HaploReg, 1000 Genome and Ensembl, to identify the gene variant of ACE‐2. We showed that ACE‐2 is highly expressed in the testes and small intestine, while its lowest level is observed in lymphocytes. Subsequently, we observed 17 gene variants containing a missense mutation potentially damaging protein level. Among these genes, single nucleotide polymorphism (SNP) rs370187012 shows the highest damage‐level score, while the lowest effect is in SNP rs4646116. The highest frequency of the C allele was observed in European populations (1%). In addition to showing that ACE‐2 is expressed in several organs, we concluded that the ACE‐2 gene variation can be found in African, American, Southeast and East Asian, and European populations. The polymorphisms of ACE‐2 impact on the ACE2 protein structure and the binding capacity of the ACE‐2 receptor with the S‐Protein of SARS‐CoV‐2.
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来源期刊
Indonesian Journal of Biotechnology
Indonesian Journal of Biotechnology Environmental Science-Environmental Science (miscellaneous)
CiteScore
1.00
自引率
0.00%
发文量
20
审稿时长
12 weeks
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