用于增强纳米QSAR模型的人工增强数据集。一种基于拓扑投影的方法。

IF 3.6 3区 医学 Q3 NANOSCIENCE & NANOTECHNOLOGY Nanotoxicology Pub Date : 2023-08-01 Epub Date: 2023-12-01 DOI:10.1080/17435390.2023.2268163
Irini Furxhi, Michal Kalapus, Anna Costa, Tomasz Puzyn
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引用次数: 0

摘要

纳米信息学需要准确的预测模型来评估纳米材料的潜在危害。然而,有限的数据可用性和NMs物理化学性质及其与生物介质相互作用的多样性阻碍了稳健的纳米定量构效关系(QSAR)模型的发展。本文提出了一种将人工数据生成技术和地形投影相结合的方法,以解决数据集大小不足及其化学空间代表性有限的挑战。通过利用地形特征中嵌入的丰富信息,该方法增强了化学空间的表现力,从而能够更深入地探索结构-活性关系。我们通过大量实验证明了我们的方法的有效性,使用了各种机器学习回归算法来验证方法。最后,我们比较了基于不同建模场景的两种不同的重采样方法。结果表明,QSAR模型的预测性能显著提高,这表明在纳米信息学领域,克服小型数据集的局限性是一种很有前途的策略。所提出的方法通过开发更准确的预测模型来评估NMs的潜在危害,为推进纳米安全领域的纳米信息学研究提供了值得注意的潜力。
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Artificial augmented dataset for the enhancement of nano-QSARs models. A methodology based on topological projections.

Nanoinformatics demands accurate predictive models to assess the potential hazards of nanomaterials (NMs). However, limited data availability and the diverse nature of NMs physicochemical properties and their interaction with biological media, hinder the development of robust nano-Quantitative Structure-Activity Relationship (QSAR) models. This article proposes an approach that combines artificially data generation techniques and topological projections to address the challenges of insufficient dataset sizes and their limited representativeness of the chemical space. By leveraging the rich information embedded in the topological features, this methodology enhances the representation of the chemical space, enabling a more an exploration of the structure-activity relationships. We demonstrate the efficacy of our approach through extensive experiments, employing various machine learning regression algorithms to validate the methodology. Finally, we compare two different resampling approaches based on different modeling scenarios. The results showcase a significant improved predictive performance of QSAR models demonstrating a promising strategy to overcome the limitations of small datasets in the field of nanoinformatics. The proposed approach offers noteworthy potential for advancing nanoinformatics research within the nanosafety domain by enabling the development of more accurate predictive models for assessing the potential hazards associated with NMs.

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来源期刊
Nanotoxicology
Nanotoxicology 医学-毒理学
CiteScore
10.10
自引率
4.00%
发文量
45
审稿时长
3.5 months
期刊介绍: Nanotoxicology invites contributions addressing research relating to the potential for human and environmental exposure, hazard and risk associated with the use and development of nano-structured materials. In this context, the term nano-structured materials has a broad definition, including ‘materials with at least one dimension in the nanometer size range’. These nanomaterials range from nanoparticles and nanomedicines, to nano-surfaces of larger materials and composite materials. The range of nanomaterials in use and under development is extremely diverse, so this journal includes a range of materials generated for purposeful delivery into the body (food, medicines, diagnostics and prosthetics), to consumer products (e.g. paints, cosmetics, electronics and clothing), and particles designed for environmental applications (e.g. remediation). It is the nano-size range if these materials which unifies them and defines the scope of Nanotoxicology . While the term ‘toxicology’ indicates risk, the journal Nanotoxicology also aims to encompass studies that enhance safety during the production, use and disposal of nanomaterials. Well-controlled studies demonstrating a lack of exposure, hazard or risk associated with nanomaterials, or studies aiming to improve biocompatibility are welcomed and encouraged, as such studies will lead to an advancement of nanotechnology. Furthermore, many nanoparticles are developed with the intention to improve human health (e.g. antimicrobial agents), and again, such articles are encouraged. In order to promote quality, Nanotoxicology will prioritise publications that have demonstrated characterisation of the nanomaterials investigated.
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