通过对根状芽孢杆菌CIP111899的计算机基因组分析揭示潜在的植物促生长性状

Q4 Multidisciplinary Scientific Journal of King Faisal University Pub Date : 2023-01-01 DOI:10.37575/b/sci/230003
Guendouz Dif, A. Zitouni
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引用次数: 0

摘要

本研究的目的是检测从玉米根表面分离的菌株CIP111899的全基因组,以揭示与促进植物生长有关的基因的存在。基于基因组的分类显示,菌株CIP111899属于一个名为根状芽孢杆菌的新种。第二步,利用多种信息工具对CIP111899基因组进行多层次分析。这包括使用分析技术检查与基因相关的功能类别,即使用RAST服务器进行注释,然后使用Prokka程序识别生长促进基因,最后通过反smash分析检测负责次级代谢的基因组。对菌株CIP111899的基因组分析结果表明,菌株CIP111899存在多个增强抗逆性的基因,如编码酶和抗氧化剂(超氧化物歧化酶、过氧化物酶和过氧化氢酶)的基因。此外,还鉴定了多种植物生长促进基因,包括与无机磷的溶解度、植物激素产生和铁吸收有关的基因。综上所述,由于CIP111899菌株的遗传组成,它有望成为促进植物生长从而改善粮食安全的潜在药剂。
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Revealing of Potential Plant Growth-Enhancing Traits Through In Silico Genomic Analysis of Bacillus Rhizoplanae CIP111899
The objective of this study was to examine the whole genome of the bacterial strain CIP111899, isolated from the root surface of maize (Zea mays), in order to reveal the presence of genes implicated in enhancing plant growth. The genome-based taxonomy revealed that strain CIP111899 belongs to a new species called Bacillus rhizoplanae. In the second step, the genome of CIP111899 was analyzed on multiple levels using various information tools. This involved examining functional categories associated with genes using analytical techniques, namely, annotation using the RAST server, then identifying growth-promoting genes with the Prokka program, and finally detecting groups of genes responsible for secondary metabolism through antiSMASH analysis. The results of the genomic analysis of strain CIP111899 showed the presence of multiple genes that enhance stress tolerance, such as those encoding enzymes and antioxidants (superoxide dismutase, peroxidases, and catalase). Additionally, various plant growth-promoting genes were identified, including those involved in the solubility of inorganic phosphorus, phytohormone production, and iron uptake. In conclusion, strain CIP111899 has shown promise as a potential agent for promoting plant growth and thereby improving food security due to its genetic composition.
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来源期刊
Scientific Journal of King Faisal University
Scientific Journal of King Faisal University Multidisciplinary-Multidisciplinary
CiteScore
0.60
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0.00%
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期刊介绍: The scientific Journal of King Faisal University is a biannual refereed scientific journal issued under the guidance of the University Scientific Council. The journal also publishes special and supplementary issues when needed. The first volume was published on 1420H-2000G. The journal publishes two separate issues: Humanities and Management Sciences issue, classified in the Arab Impact Factor index, and Basic and Applied Sciences issue, on June and December, and indexed in (C​ABI) and (SCOPUS) international databases.
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