明胶蛋白在小鼠肺模型中的遗传调控及其潜在的广谱生物学功能

Xiaoyun Liu, H. Feng, Jiaqian Zhu, R. Stein, Yue Huang, Y. Jiao, Xiaodong Zhu
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摘要

人们对凝胶潜在的生物学功能及其与人体免疫系统、疾病和其他失调的关系进行了大量的研究。我们的研究目的是确定调节小鼠肺凝胶蛋白的遗传因素,并利用明确的重组近交系分析其功能免疫系统。为此,我们选择了由C57BL/6J (B6)和DBA/2J (D2)祖菌株的后代衍生的重组BXD自交系(RI)。采用肺组织全基因组基因表达进行eQTL定位。利用生物信息学工具和基因分型数据对候选基因进行分析。利用基因网络和相关过程来评估凝胶与生物学性状之间的关系。数据表明,9号染色体上覆盖21Mb - 30Mb基因组区域的eQTL在gelsolin表达水平调控中起主要作用。该区域的遗传因子分析表明,Ncapd3是最受欢迎的候选基因。其表达水平与凝胶的表达水平高度相关。两种基因型SNP (rs13480109)在Ncapd3调控区gelsolin的表达水平存在显著差异。另外的关联分析表明,凝胶可能具有广泛的生物学功能。gelsolin的表达水平与多种生物学功能的基因有很高的相关性。这些高度相关的基因主要与蛋白质结合有关。gelsolin的表达也与多种已知的免疫表型相关。这些数据对我们目前对凝胶生物学功能的了解有重大贡献。
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Genetic Regulation of Gelsolin in Lung in Mouse Model and its PotentialBroad Spectrum of Biological Functions
Considerable studies have been done on the potential biological function of gelsolin and its connection to human immune system, diseases and other disorders. The objective of our study was to identify genetic factors that regulate gelsolin in mouse lung and analyze its function immune system using well defined recombinant inbred strains. For this purpose we chose the BXD recombinant inbred (RI) strains derived from progeny of the C57BL/6J (B6) and DBA/2J (D2) progenitor strains. Whole genome gene expression in lung was used for the eQTL mapping. Bioinformatics tools and genotyping data were used for the candidate gene analysis. Gene network and correlation processes were used to assess the association between gelsolin and biological traits. Data indicated that an eQTL on chromosome 9 covering a genomic area between 21Mb and 30Mb is a major play in regulation of the gelsolin expression level. Analysis of genetic elements within this region revealed that Ncapd3 is the most favorite candidate gene. Its expression level is highly associated to that of gelsolin. The expression level of gelsolin between mouse strains with two genotype of SNP (rs13480109) in a regulatory region of the Ncapd3 showed a significant difference. Additional association analysis suggest that gelsolin may has a broad spectrum of biological function. The expression level of gelsolin has very high correlation with genes in a variety of biological function. These highly associated genes are mainly for protein binding. The expression of gelsolin is also correlated to multiple known immune phenotypes. These data contribute significantly to our current knowledge on the biological function of gelsolin.
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