有丝核基因组中群体多态性的积累及其对极端环境(如法医目的的海拔)的可能适应效应

G.C. Iannacone , P. Ramírez
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引用次数: 0

摘要

我们分析了2504个个体的群体多态性积累——26个群体的核基因组(nDNA)(81个与极端环境有关的基因)和47个群体的3295个线粒体基因组(mtDNA),目的是发现与海拔高度等极端环境相关的有丝分裂核关系。为此,我们使用自己开发的算法来确定基因组中各片段的多态性积累,从而能够进行多变量分析,以发现群体之间的SNPs差异和相似性。结果显示,秘鲁人群中16/81个基因中113/293970个nDNA SNPs的有丝分裂核关系具有统计学意义。在mtDNA的情况下,我们发现6/22个mtDNA位置的有丝分裂核关系具有统计学意义——基因。此外,在秘鲁人群中,相对于其他人群,MRPP3的多态性贡献最大。然后,在与秘鲁基因相近的人群中,这些nDNA和mtDNA SNPs可以应用于法医基因组表型,以确定可能适应极端条件(如海拔)的群体,或在低海拔和高海拔人群之间进行个体化。
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Accumulation of population polymorphisms in the mitonuclear genome with probable adaptive effect to extreme environments as altitude for forensic purposes

We analyzed the accumulation of population polymorphism in 2504 individuals - nuclear genomes (nDNA) of 26 populations (81 genes associated to extreme environments) and 3295 mitochondrial genomes (mtDNA) of 47 populations with the aim to found mitonuclear relationship associated an extremes environment as altitude. For that, we use an algorithm developed by us to determine the accumulation of polymorphisms by segments in the genome and thus be able to perform the multivariate analysis to found SNPs differences and similarities among populations. The results showed in Peruvian population a statistically significant mitonuclear relationship for 113/293970 nDNA SNPs in 16/81 genes. In the case of the mtDNA, we found a statistically significant mitonuclear relationship for 6/22 mtDNA positions – Gene. Additionally for the Peruvian population, the MRPP3 had the greatest polymorphism contribution with respect to other populations. Then, these nDNA and mtDNA SNPs in genetically close populations to Peru can be applied to forensic genomic phenotyping to identify groups likely adapted to extreme conditions (such as altitude) or make individualization between low and high altitude populations.

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来源期刊
Forensic Science International: Genetics Supplement Series
Forensic Science International: Genetics Supplement Series Medicine-Pathology and Forensic Medicine
CiteScore
0.40
自引率
0.00%
发文量
122
审稿时长
25 days
期刊介绍: The Journal of Forensic Science International Genetics Supplement Series is the perfect publication vehicle for the proceedings of a scientific symposium, commissioned thematic issues, or for disseminating a selection of invited articles. The Forensic Science International Genetics Supplement Series is part of a duo of publications on forensic genetics, published by Elsevier on behalf of the International Society for Forensic Genetics.
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