高电位Jararhagin抑制剂的计算机预测:Batimastat, EDTA和Hydroxytyrosol的比较

C. A. Kurniasari, Bayu D. Prakoso, Eka Lestari, N. Kurniawan
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摘要

一类P-III SVMP的一个例子是jararhagin,它起源于Bothrops jararaca。本研究的目的是比较各化合物抑制SVMP出血作用的最有效抑制剂的可能性和确切时间。可以用几种已知的SVMP抑制剂类型的化合物来抑制出血活性,特别是jararhagin (PDB ID: 1C9G)与整合素21 (PDB ID: 1AOX)结合。拟肽类化合物有batimastat (PubChem ID: 5362422),锌螯合剂EDTA (PubChem ID: 6049),植物化合物羟基酪醇(PubChem ID: 82755)等。从结合能值对batimastat的抑制特性进行研究,发现这些抑制剂与整合素21 (-277.1 kcal/mol)相比,更容易与jararhagin (-289.0 kcal/mol)结合。由于该抑制剂所处的位置和较高的正结合能(-784.1 kcal/mol),能更有效地抑制蛇咬伤后与jararhagin结合在血管中的传播。然而,在batimastat抑制剂、jararhagin和integrin之间的相互作用中形成不利的键21。在抑制剂EDTA的相互作用中,发现该化合物也更容易与jararhagin结合(-227.23 kcal/mol),但由于整合素的位置和更高的正结合能(-721.57 kcal/mol),该抑制剂更容易与整合素结合(21)。另一边也有不利键。而羟基酪醇的相互作用表明,抑制剂更容易与jararhagin相互作用,并且在机体暴露于jararhagin (-781.33 kcal/mol)后被消耗而不表现出不利的键,从而更有效地发挥jararhagin抑制剂的作用。我们可以得出结论,橄榄油中羟基酪醇形成的天然抑制剂更稳定,并且最有可能预防出血性症状
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In Silico Prediction of High Potential Jararhagin Inhibitor: Comparison of Batimastat, EDTA and Hydroxytyrosol
: One example of a group P-III SVMP is jararhagin which originates from a Bothrops jararaca . This study was conducted to compare the possibility of inhibitors that have the highest effectiveness and exact time of each compound to inhibit hemorragic effect of SVMP. Inhibition of hemorrhagic activity can be done with several types of compounds that have been known to be inhibitors for SVMP especially jararhagin (PDB ID: 1C9G) to bind with integrin  2  1 (PDB ID: 1AOX). There are batimastat (PubChem ID: 5362422) as one of peptidomimetic compounds, EDTA (PubChem ID: 6049) as one of zinc chelating agents, and plant compounds such as hydroxytyrosol (PubChem ID: 82755). The batimastat inhibitory properties from value of binding energy, found that these inhibitor were more easily bound to jararhagin (-289.0 kcal/mol) compared to integrin  2  1 (-277.1 kcal/mol). That inhibitor also more effectively inhibited by bounding to jararhagin spread in blood vessels after snakebite because of it’s position and more positive binding energy (-784.1 kcal/mol). However, unfavorable bonds are formed in the interaction between batimastat inhibitors, jararhagin and integrin  2  1 . In inhibitor EDTA interaction, it was found that this compound also more easily bound to jararhagin (-227.23 kcal/mol), but this inhibitor are more effectively inhibited by bounding to integrin  2  1 because of it’s position and more positive binding energy (-721.57 kcal/mol). In other side it also has unfavorable bonds. While the interaction of hydroxytyrosol shows that inhibitor are easier to interact with jararhagin and more effectively acts as a jararhagin inhibitor by being consumed after the body is exposed to jararhagin (-781.33 kcal/mol) without showing an unfavorable bond. We can conclude that the natural inhibitors formed in hydroxytyrosol from olive oil are more stable and have highest possibility in preventing hemorrhagic symptoms
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