水介质中鸟嘌呤八元结构的密度功能研究

Mykola M. Ilchenko, I. Dubey
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引用次数: 3

摘要

利用M06-2X泛函和6-31G(d, p)基集,采用密度泛函理论(DFT)计算确定了水中鸟嘌呤四元和八元的结构和能量。在真空中发现鸟嘌呤四重奏不仅有Hoogsteen或分叉,而且有混合氢键体系;在水中,后两种形式转化为经典的hoogsteen型结构。鸟嘌呤四元对与Hoogsteen、分叉或混合氢键体系形成4种D4、C4和S4对称的g -八元构型。在水介质中g -八隅体分子体系最有利的结构是由一对混合hoogsteen分叉型g -四隅体组成的s4对称结构
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Density Functional Study of the Structure of Guanine Octets in Aqueous Medium
The structures and energies of guanine quartets and octets in water were determined by DFT (Density Functional Theory) calculations using M06-2X functional and 6-31G(d, p) basic set. Guanine quartets in vacuum were found to have not only the Hoogsteen or bifurcated, but also mixed system of hydrogen bonds; in water the latter two forms are transformed into the classic Hoogsteen-type structure. Four stable configurations of G-octets with D4, C4 and S4 symmetry formed by the pairs of guanine quartets with Hoogsteen, bifurcated or mixed system of H-bonds were identified. The most advantageous structure of the G-octet molecular system in aqueous medium was shown to be S4-symmetric structure consisting of the pair of mixed Hoogsteen-bifurcated type G-quartets
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