Y X Li, X P Feng, H L Wang, C H Meng, J Zhang, Y Qian, J F Zhong, S X Cao
{"title":"转录组分析揭示了参与胡羊热应激的相应基因和关键通路。","authors":"Y X Li, X P Feng, H L Wang, C H Meng, J Zhang, Y Qian, J F Zhong, S X Cao","doi":"10.1007/s12192-019-01019-6","DOIUrl":null,"url":null,"abstract":"<p><p>Heat stress (HS) seriously affects animal performance. In view of global warming, it is essential to understand the regulatory mechanisms by which animals adapt to heat stress. In this study, our aim was to explore the genes and pathways involved in heat stress in sheep. To this end, we used transcriptome analysis to understand the molecular responses to heat stress and thereby identify means to protect sheep from heat shock. To obtain an overview of the effects of heat stress on sheep, we used the hypothalamus for transcriptome sequencing and identified differentially expressed genes (DEGs; false discovery rate (FDR) < 0.01; fold change > 2) during heat stress. A total of 1423 DEGs (1122 upregulated and 301 downregulated) were identified and classified into Gene Ontology (GO) categories and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Heat stress triggered dramatic and complex alterations in gene expression in the hypothalamus. We hypothesized that heat stress induced apoptosis and dysfunction in cells and vital organs and affected growth, development, reproduction, and circadian entrainment via the calcium signaling pathway, which influences ribosome assembly and function. Real-time PCR was used to evaluate the expression of the genes regulating important biological functions or whose expression profiles were significantly changed after acute heat stress (FDR < 0.01; fold change > 4), and the results showed that the expression patterns of these genes were consistent with the results of transcriptome sequencing, indicating that the credibility of the sequencing results. Our data indicated that heat stress induced calcium dyshomeostasis, blocked biogenesis, caused ROS accumulation, impaired the antioxidant system and innate defense, and induced apoptosis through the P53 signaling pathway activated by PEG3, decreased growth and development, and enhanced organ damage. These data is very important and helpful to elucidate the molecular mechanism of heat stress and finally to find ways to deal with heat stress damage in sheep.</p>","PeriodicalId":9812,"journal":{"name":"Cell Stress and Chaperones","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2019-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882975/pdf/","citationCount":"0","resultStr":"{\"title\":\"Transcriptome analysis reveals corresponding genes and key pathways involved in heat stress in Hu sheep.\",\"authors\":\"Y X Li, X P Feng, H L Wang, C H Meng, J Zhang, Y Qian, J F Zhong, S X Cao\",\"doi\":\"10.1007/s12192-019-01019-6\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Heat stress (HS) seriously affects animal performance. In view of global warming, it is essential to understand the regulatory mechanisms by which animals adapt to heat stress. 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We hypothesized that heat stress induced apoptosis and dysfunction in cells and vital organs and affected growth, development, reproduction, and circadian entrainment via the calcium signaling pathway, which influences ribosome assembly and function. Real-time PCR was used to evaluate the expression of the genes regulating important biological functions or whose expression profiles were significantly changed after acute heat stress (FDR < 0.01; fold change > 4), and the results showed that the expression patterns of these genes were consistent with the results of transcriptome sequencing, indicating that the credibility of the sequencing results. Our data indicated that heat stress induced calcium dyshomeostasis, blocked biogenesis, caused ROS accumulation, impaired the antioxidant system and innate defense, and induced apoptosis through the P53 signaling pathway activated by PEG3, decreased growth and development, and enhanced organ damage. 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引用次数: 0
摘要
热应激(HS)严重影响动物的表现。鉴于全球变暖,了解动物适应热应激的调控机制至关重要。在这项研究中,我们的目的是探索参与绵羊热应激的基因和途径。为此,我们利用转录组分析来了解绵羊对热应激的分子反应,从而找出保护绵羊免受热冲击的方法。为了全面了解热应激对绵羊的影响,我们利用下丘脑进行了转录组测序,并确定了热应激期间的差异表达基因(DEGs;误发现率(FDR)2)。共鉴定出 1423 个 DEGs(上调 1122 个,下调 301 个),并将其归入基因本体(Gene Ontology,GO)类别和京都基因组百科全书(Kyoto Encyclopedia of Genes and Genomes,KEGG)通路。热应激引发了下丘脑基因表达的巨大而复杂的变化。我们假设热应激会诱导细胞和重要器官的凋亡和功能障碍,并通过影响核糖体组装和功能的钙信号通路影响生长、发育、繁殖和昼夜节律。我们利用实时 PCR 技术评估了调控重要生物学功能的基因的表达情况,或其表达谱在急性热胁迫后发生显著变化的基因的表达情况(FDR 4),结果表明这些基因的表达模式与转录组测序结果一致,表明测序结果可信。我们的数据表明,热胁迫诱导钙失衡,阻断生物生成,导致ROS积累,损害抗氧化系统和先天防御系统,并通过PEG3激活的P53信号通路诱导细胞凋亡,降低生长发育,增强器官损伤。这些数据对于阐明绵羊热应激的分子机制,最终找到应对热应激损伤的方法具有重要意义。
Transcriptome analysis reveals corresponding genes and key pathways involved in heat stress in Hu sheep.
Heat stress (HS) seriously affects animal performance. In view of global warming, it is essential to understand the regulatory mechanisms by which animals adapt to heat stress. In this study, our aim was to explore the genes and pathways involved in heat stress in sheep. To this end, we used transcriptome analysis to understand the molecular responses to heat stress and thereby identify means to protect sheep from heat shock. To obtain an overview of the effects of heat stress on sheep, we used the hypothalamus for transcriptome sequencing and identified differentially expressed genes (DEGs; false discovery rate (FDR) < 0.01; fold change > 2) during heat stress. A total of 1423 DEGs (1122 upregulated and 301 downregulated) were identified and classified into Gene Ontology (GO) categories and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Heat stress triggered dramatic and complex alterations in gene expression in the hypothalamus. We hypothesized that heat stress induced apoptosis and dysfunction in cells and vital organs and affected growth, development, reproduction, and circadian entrainment via the calcium signaling pathway, which influences ribosome assembly and function. Real-time PCR was used to evaluate the expression of the genes regulating important biological functions or whose expression profiles were significantly changed after acute heat stress (FDR < 0.01; fold change > 4), and the results showed that the expression patterns of these genes were consistent with the results of transcriptome sequencing, indicating that the credibility of the sequencing results. Our data indicated that heat stress induced calcium dyshomeostasis, blocked biogenesis, caused ROS accumulation, impaired the antioxidant system and innate defense, and induced apoptosis through the P53 signaling pathway activated by PEG3, decreased growth and development, and enhanced organ damage. These data is very important and helpful to elucidate the molecular mechanism of heat stress and finally to find ways to deal with heat stress damage in sheep.