基于遗忘局部搜索的晶体结构预测

Dmytro Antypov, Argyrios Deligkas, V. Gusev, M. Rosseinsky, P. Spirakis, Michail Theofilatos
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引用次数: 4

摘要

我们研究晶体结构预测,这是计算化学的主要问题之一。这本质上是一个连续优化问题,许多不同的、简单的和复杂的方法已经被提出和应用。简单的搜索技术易于理解,通常易于实现,但在实践中可能很慢。另一方面,更复杂的方法通常表现良好,但几乎所有这些方法都有大量需要微调的参数,并且在大多数情况下,需要化学专业知识才能正确设置它们。此外,由于涉及参数调谐的化学专业知识,这些方法可能对先前已知的晶体结构有偏倚。我们的贡献是双重的。首先,我们从理论计算机科学的角度形式化了晶体结构预测问题以及其他几个中间问题。其次,我们提出了一种基于局部搜索的遗忘晶体结构预测算法。遗忘意味着我们的算法只需要对我们试图计算的晶体结构的组成有最小的了解。此外,我们的算法可以通过{\em any}方法作为中间步骤使用。我们的实验表明,我们的算法优于标准的盆地跳跃算法,这是一个研究得很好的算法。
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Crystal Structure Prediction via Oblivious Local Search
We study Crystal Structure Prediction, one of the major problems in computational chemistry. This is essentially a continuous optimization problem, where many different, simple and sophisticated, methods have been proposed and applied. The simple searching techniques are easy to understand, usually easy to implement, but they can be slow in practice. On the other hand, the more sophisticated approaches perform well in general, however almost all of them have a large number of parameters that require fine tuning and, in the majority of the cases, chemical expertise is needed in order to properly set them up. In addition, due to the chemical expertise involved in the parameter-tuning, these approaches can be {\em biased} towards previously-known crystal structures. Our contribution is twofold. Firstly, we formalize the Crystal Structure Prediction problem, alongside several other intermediate problems, from a theoretical computer science perspective. Secondly, we propose an oblivious algorithm for Crystal Structure Prediction that is based on local search. Oblivious means that our algorithm requires minimal knowledge about the composition we are trying to compute a crystal structure for. In addition, our algorithm can be used as an intermediate step by {\em any} method. Our experiments show that our algorithms outperform the standard basin hopping, a well studied algorithm for the problem.
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