N. Susanti, N. Laksmiani, N. Noviyanti, K. Arianti, I. K. Duantara
{"title":"MOLECULAR DOCKING TERPINEN-4-OL SEBAGAI ANTIINFLAMASI PADA ATEROSKLEROSIS SECARA IN SILICO","authors":"N. Susanti, N. Laksmiani, N. Noviyanti, K. Arianti, I. K. Duantara","doi":"10.24843/jchem.2019.v13.i02.p16","DOIUrl":null,"url":null,"abstract":"Atherosclerosis is a chronic inflammatory disease that begins with endothelial dysfunction, it caused fat accumulation and plaque growth in the inner arteries walls. Endothelial dysfunction will activate the Mitogen Activated Protein Kinase (MAPK) pathway involving ERK1, ERK2, JNK1, JNK2, and p38MAPK proteins, as well as the Nuclear Factor Kappa B (NF-kB) pathway involving IKK proteins. Terpinen-4-ol is constituent found in the bangle rhizome. The purpose of this study were to determine the affinity and mechanisms of terpinen-4-ol against ERK1, ERK2, JNK1, JNK2, and p38MAPK proteins as anti-inflammatory in atherosclerosis performed using molecular docking method. The study was conducted exploratively with several steps such as preparation and optimization of terpinen-4-ol structure, preparation of 3D ERK1, ERK2, JNK1, JNK2, and p38MAPK proteins, validation method of molecular docking, and docking terpinen-4-ol in these proteins. The docking result are assessed from the binding energy and hydrogen bonds formed between terpinen-4-ol and proteins. The smaller value of binding energy terpinen-4-ol with target proteins showed the complex that form more stable. The result showed that terpinen-4-ol and has activity in inhibiting the inflammatory process because it is able to disturb ERK1, ERK2, JNK1, JNK2, and p38MAPK proteins with respective bond energy values -5,12; -5,24; -5,08; -5,88; and -4,99 Kcal/mol. The molecular mechanism in inhibiting the activity of ERK1, ERK2, JNK1, JNK2, and p38MAPK proteins is through the formation of hydrogen bonds in these proteins. These results show that terpinen-4-ol have the potential to inhibit inflammatory process and the formation of atherosclerotic plaque can be obstructed. \nKeywords : atherosclerosis, terpinen-4-ol, molecular docking, in silico","PeriodicalId":17780,"journal":{"name":"Jurnal Kimia","volume":"281 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2019-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"3","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Jurnal Kimia","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.24843/jchem.2019.v13.i02.p16","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 3
摘要
动脉粥样硬化是一种始于内皮功能障碍的慢性炎症性疾病,它引起动脉内壁脂肪堆积和斑块生长。内皮功能障碍会激活丝裂原活化蛋白激酶(MAPK)通路,涉及ERK1、ERK2、JNK1、JNK2和p38MAPK蛋白,以及涉及IKK蛋白的核因子κ B (NF-kB)通路。松油烯-4-醇是一种存在于根茎中的成分。本研究的目的是通过分子对接方法确定松油烯-4-醇对动脉粥样硬化中ERK1、ERK2、JNK1、JNK2和p38MAPK蛋白的抗炎作用及其机制。本研究通过制备和优化松油烯-4-醇结构,制备3D ERK1、ERK2、JNK1、JNK2和p38MAPK蛋白,验证分子对接方法,将松油烯-4-醇与这些蛋白对接等步骤进行探索性研究。通过松油烯-4-醇与蛋白质之间形成的结合能和氢键来评价对接结果。松油烯-4-醇与靶蛋白的结合能越小,所形成的复合物越稳定。结果表明,松油烯-4-醇和具有抑制炎症过程的活性,因为它能够干扰ERK1、ERK2、JNK1、JNK2和p38MAPK蛋白,其键能值分别为-5,12;5, 24;5, 08年;5, 88;和-4,99 Kcal/mol。抑制ERK1、ERK2、JNK1、JNK2和p38MAPK蛋白活性的分子机制是通过在这些蛋白中形成氢键。这些结果表明,松油烯-4-醇具有抑制炎症过程的潜力,可以阻断动脉粥样硬化斑块的形成。关键词:动脉粥样硬化;松油烯-4-醇;分子对接
MOLECULAR DOCKING TERPINEN-4-OL SEBAGAI ANTIINFLAMASI PADA ATEROSKLEROSIS SECARA IN SILICO
Atherosclerosis is a chronic inflammatory disease that begins with endothelial dysfunction, it caused fat accumulation and plaque growth in the inner arteries walls. Endothelial dysfunction will activate the Mitogen Activated Protein Kinase (MAPK) pathway involving ERK1, ERK2, JNK1, JNK2, and p38MAPK proteins, as well as the Nuclear Factor Kappa B (NF-kB) pathway involving IKK proteins. Terpinen-4-ol is constituent found in the bangle rhizome. The purpose of this study were to determine the affinity and mechanisms of terpinen-4-ol against ERK1, ERK2, JNK1, JNK2, and p38MAPK proteins as anti-inflammatory in atherosclerosis performed using molecular docking method. The study was conducted exploratively with several steps such as preparation and optimization of terpinen-4-ol structure, preparation of 3D ERK1, ERK2, JNK1, JNK2, and p38MAPK proteins, validation method of molecular docking, and docking terpinen-4-ol in these proteins. The docking result are assessed from the binding energy and hydrogen bonds formed between terpinen-4-ol and proteins. The smaller value of binding energy terpinen-4-ol with target proteins showed the complex that form more stable. The result showed that terpinen-4-ol and has activity in inhibiting the inflammatory process because it is able to disturb ERK1, ERK2, JNK1, JNK2, and p38MAPK proteins with respective bond energy values -5,12; -5,24; -5,08; -5,88; and -4,99 Kcal/mol. The molecular mechanism in inhibiting the activity of ERK1, ERK2, JNK1, JNK2, and p38MAPK proteins is through the formation of hydrogen bonds in these proteins. These results show that terpinen-4-ol have the potential to inhibit inflammatory process and the formation of atherosclerotic plaque can be obstructed.
Keywords : atherosclerosis, terpinen-4-ol, molecular docking, in silico