运用多变量分析和K-means聚类方法进行辣椒杂交亲本选择

F. Sharmeen, Mohammed Saikat, J. Ahmed, M. Islam, A. Islam
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摘要

本研究旨在阐明辣椒(Capsicum annuum L.) 28个基因型的遗传多样性程度。选定基因型的辣椒植物在孟加拉国Bangbandhu Sheikh Mujibur Rahman农业大学遗传与植物育种系野外实验室按照推荐的农艺做法种植。试验采用完全随机区组设计,重复3次。方差分析显示所研究性状的基因型之间存在相当大的变异性。利用Mahalanobis 's D2统计量和K-means聚类对辣椒16个生长和产量贡献性状的遗传多样性进行了估计。采用非分层聚类法将基因型分为4个不同的聚类。聚类III基因型最多(13个),其次是聚类I、IV和II,分别有7个、5个和3个基因型。聚类II和聚类IV间遗传差异最大(9.87),聚类II间遗传距离最大(4.37)。在单株果数和单株果产量等大部分有价值性状上,聚类ⅱ最重要,聚类均值最大。单株产量、100%结实天数、开花期和单果重等性状对分化贡献最大。考虑到多样性格局和其他园艺性能,可以考虑将来自第1集群的第7和第20代、来自第4集群的第8和第10代以及来自第3集群的第24代作为辣椒高效杂交的亲本。
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Parent selection for hybridization in chili (Capsicum annuum L.) using multivariate analysis and K-means clustering
The study was conducted to elucidate the extent of genetic diversity of 28 chilli (Capsicum annuum L.) genotypes. Chilli plants of the selected genotypes were grown in the Field Laboratory of the Department of Genetics and Plant Breeding of Bangbandhu Sheikh Mujibur Rahman Agricultural University, Bangladesh with recommended agronomic practices. The experiment was laid out in a randomized complete block design with tree replications. The analysis of variance revealed considerable variability among the genotypes for the character studied. Genetic diversity in chilli genotypes were estimated based on 16 growth and yield contributing characters using Mahalanobis’s D2 statistics and K-means clustering. The genotypes were grouped into four different clusters by non-hierarchical clustering. Cluster III had the maximum number (13) of genotypes followed by cluster I, IV and II with 7, 5 and 3 genotypes, respectively. The highest inter-cluster genetic divergence (9.87) was recorded between clusters II and IV, whereas the highest intra-cluster distance was recorded in cluster II (4.37). Cluster II was observed to be the most important with maximum cluster means for most of the valuable traits including number of fruits per plant and number of fruit yield per plant. The characters fruit yield/plant, days to 100% fruiting, days to first flowering and individual fruit weight contributed maximum towards divergence. Considering diversity pattern and other horticultural performance the Gen7 and Gen20 from cluster I, Gen8 and Gen10 from cluster IV and Gen24 from cluster III may be taken into consideration as better parents for an efficient hybridization programme of chilli.
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