N Mao, Y Y Xu, Y X Zhang, H Zhou, X B Huang, C L Hou, L Fan
{"title":"Helvella 属的系统发育和物种多样性,重点是来自中国的 18 个新物种。","authors":"N Mao, Y Y Xu, Y X Zhang, H Zhou, X B Huang, C L Hou, L Fan","doi":"10.3114/fuse.2023.12.08","DOIUrl":null,"url":null,"abstract":"<p><p><b></b> <i>Helvella</i> is a widespread, frequently encountered fungal group appearing in forests, but the species diversity and molecular phylogeny of <i>Helvella</i> in China remains incompletely understood. In this work, we performed comprehensive phylogenetic analyses using multilocus sequence data. Six datasets were employed, including a five-locus concatenated dataset (ITS, nrLSU, <i>tef1-α, rpb2, hsp)</i>, a two-locus concatenated dataset (ITS, nrLSU), and four single-locus datasets (ITS) that were divided based on the four different phylogenetic clades of <i>Helvella</i> recognized in this study. A total of I 946 sequences were used, of which 713 were newly generated, including 170 sequences of ITS, 174 sequences of nrLSU, 131 sequences of <i>tef1-α</i>, 107 sequences of <i>rpb2</i> and 131 sequences of <i>hsp.</i> The phylogeny based on the five-locus concatenated dataset revealed that <i>Helvellas. str</i>. is monophyletic and four phylogenetic clades are clearly recognized, <i>i.e., Acetabulum</i> clade, <i>Crispa</i> clade, <i>Elastica</i> clade, and <i>Lacunosa</i> clade. A total of 24 lineages or subclades were recognized, II of which were new, the remaining 13 corresponding with previous studies. Chinese <i>Helvella</i> species are distributed in 22 lineages across four clades. Phylogenetic analyses based on the two-locus concatenated dataset and four single-locus datasets confirmed the presence of at least 93 phylogenetic species in China. Among them, 58 are identified as known species, including a species with a newly designated lectotype and epitype, 18 are newly described in this paper, and the remaining 17 taxa are putatively new to science but remain unnamed due to the paucity or absence of ascomatal materials. In addition, the <i>Helvella</i> species previously recorded in China are discussed. A list of 76 confirmed species, including newly proposed species, is provided. The occurrence of <i>H. crispa</i> and <i>H. elastica</i> are not confirmed although both are commonly recorded in China. <b>Citation:</b> Mao N, Xu YY, Zhang YX, Zhou H, Huang XB, Hou CL, Fan L (2023). Phylogeny and species diversity of the genus <i>Helvella</i> with emphasis on eighteen new species from China. <i>Fungal Systematics and Evolution</i> <b>12</b>: 111-152. doi: 10.3114/fuse.2023.12.08.</p>","PeriodicalId":7636,"journal":{"name":"Algorithms","volume":"10 1","pages":"111-152"},"PeriodicalIF":1.8000,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10964050/pdf/","citationCount":"0","resultStr":"{\"title\":\"Phylogeny and species diversity of the genus <i>Helvella</i> with emphasis on eighteen new species from China.\",\"authors\":\"N Mao, Y Y Xu, Y X Zhang, H Zhou, X B Huang, C L Hou, L Fan\",\"doi\":\"10.3114/fuse.2023.12.08\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><b></b> <i>Helvella</i> is a widespread, frequently encountered fungal group appearing in forests, but the species diversity and molecular phylogeny of <i>Helvella</i> in China remains incompletely understood. In this work, we performed comprehensive phylogenetic analyses using multilocus sequence data. Six datasets were employed, including a five-locus concatenated dataset (ITS, nrLSU, <i>tef1-α, rpb2, hsp)</i>, a two-locus concatenated dataset (ITS, nrLSU), and four single-locus datasets (ITS) that were divided based on the four different phylogenetic clades of <i>Helvella</i> recognized in this study. A total of I 946 sequences were used, of which 713 were newly generated, including 170 sequences of ITS, 174 sequences of nrLSU, 131 sequences of <i>tef1-α</i>, 107 sequences of <i>rpb2</i> and 131 sequences of <i>hsp.</i> The phylogeny based on the five-locus concatenated dataset revealed that <i>Helvellas. str</i>. is monophyletic and four phylogenetic clades are clearly recognized, <i>i.e., Acetabulum</i> clade, <i>Crispa</i> clade, <i>Elastica</i> clade, and <i>Lacunosa</i> clade. A total of 24 lineages or subclades were recognized, II of which were new, the remaining 13 corresponding with previous studies. Chinese <i>Helvella</i> species are distributed in 22 lineages across four clades. Phylogenetic analyses based on the two-locus concatenated dataset and four single-locus datasets confirmed the presence of at least 93 phylogenetic species in China. Among them, 58 are identified as known species, including a species with a newly designated lectotype and epitype, 18 are newly described in this paper, and the remaining 17 taxa are putatively new to science but remain unnamed due to the paucity or absence of ascomatal materials. In addition, the <i>Helvella</i> species previously recorded in China are discussed. A list of 76 confirmed species, including newly proposed species, is provided. The occurrence of <i>H. crispa</i> and <i>H. elastica</i> are not confirmed although both are commonly recorded in China. <b>Citation:</b> Mao N, Xu YY, Zhang YX, Zhou H, Huang XB, Hou CL, Fan L (2023). Phylogeny and species diversity of the genus <i>Helvella</i> with emphasis on eighteen new species from China. <i>Fungal Systematics and Evolution</i> <b>12</b>: 111-152. doi: 10.3114/fuse.2023.12.08.</p>\",\"PeriodicalId\":7636,\"journal\":{\"name\":\"Algorithms\",\"volume\":\"10 1\",\"pages\":\"111-152\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2023-11-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10964050/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Algorithms\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.3114/fuse.2023.12.08\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/8/29 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q3\",\"JCRName\":\"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Algorithms","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3114/fuse.2023.12.08","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/8/29 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
Phylogeny and species diversity of the genus Helvella with emphasis on eighteen new species from China.
Helvella is a widespread, frequently encountered fungal group appearing in forests, but the species diversity and molecular phylogeny of Helvella in China remains incompletely understood. In this work, we performed comprehensive phylogenetic analyses using multilocus sequence data. Six datasets were employed, including a five-locus concatenated dataset (ITS, nrLSU, tef1-α, rpb2, hsp), a two-locus concatenated dataset (ITS, nrLSU), and four single-locus datasets (ITS) that were divided based on the four different phylogenetic clades of Helvella recognized in this study. A total of I 946 sequences were used, of which 713 were newly generated, including 170 sequences of ITS, 174 sequences of nrLSU, 131 sequences of tef1-α, 107 sequences of rpb2 and 131 sequences of hsp. The phylogeny based on the five-locus concatenated dataset revealed that Helvellas. str. is monophyletic and four phylogenetic clades are clearly recognized, i.e., Acetabulum clade, Crispa clade, Elastica clade, and Lacunosa clade. A total of 24 lineages or subclades were recognized, II of which were new, the remaining 13 corresponding with previous studies. Chinese Helvella species are distributed in 22 lineages across four clades. Phylogenetic analyses based on the two-locus concatenated dataset and four single-locus datasets confirmed the presence of at least 93 phylogenetic species in China. Among them, 58 are identified as known species, including a species with a newly designated lectotype and epitype, 18 are newly described in this paper, and the remaining 17 taxa are putatively new to science but remain unnamed due to the paucity or absence of ascomatal materials. In addition, the Helvella species previously recorded in China are discussed. A list of 76 confirmed species, including newly proposed species, is provided. The occurrence of H. crispa and H. elastica are not confirmed although both are commonly recorded in China. Citation: Mao N, Xu YY, Zhang YX, Zhou H, Huang XB, Hou CL, Fan L (2023). Phylogeny and species diversity of the genus Helvella with emphasis on eighteen new species from China. Fungal Systematics and Evolution12: 111-152. doi: 10.3114/fuse.2023.12.08.