微生物群落组成的变化影响珊瑚千孔虫黏液的生物活性

Dao Manh Cuong, Phan Thi Thu Hien, Bui Van Ngoc
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引用次数: 0

摘要

宏基因组学方法在微生物群落组成的研究中得到了迅速发展。在过去的几十年里,抗生素耐药性与新出现的疾病一起日益流行,而已知次生代谢物的反复分离和陆地环境中新化合物的减少越来越迫切地要求发现新的海洋生物活性化合物。通过DADA2管道、phyloseq和ggplot2包装对Illumina新一代测序技术获得的珊瑚Acropora millepora细菌16S rRNA序列进行配对端读,发现微生物组成发生了转变,漂白珊瑚粘液的α多样性高于健康珊瑚粘液。此外,健康和漂白的珊瑚粘液也被用来评估对副溶血性弧菌大流行菌株的抗菌活性,并确定细胞对HCT116结肠癌细胞的细胞毒性能力。在10 ~ 30µL浓度下,健康珊瑚表面黏液层(SML)对病菌生长的抑制能力均高于漂白珊瑚。用健康的SML处理结肠癌细胞系HCT116时,也清楚地观察到细胞毒性。两种黏液的细胞毒性比较表明,健康珊瑚黏液对结肠癌细胞系的抑制作用是漂白珊瑚黏液的1.5倍。当珊瑚从健康状态转变为白化状态时,微生物群落的组成会发生变化。因此,抗菌活性和细胞毒性也下降。
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CHANGES IN MICROBIAL COMMUNITY COMPOSITION AFFECT BIOACTIVITIES OF MUCUS ISOLATED FROM CORAL ACROPORA MILLEPORA
The metagenomics approach is quickly developing in researchs about the composition of a microbial community. In the past few decades, antibiotic resistance is increasingly popular together with emerging diseases while repeated isolation of known secondary metabolites and a decline of novel compounds in the terrestrial environment present an urgent requirement more and more in the discovery of novel marine bioactive compounds. Paired-end reads of 16S rRNA sequence of bacteria living in the coral Acropora millepora obtained by the Illumina next-generation sequencing technology to be processed by DADA2 pipeline, phyloseq, and ggplot2 packages showed that microbial composition has transformation, specifically, bleached coral mucus has an alpha diversity to be higher than healthy coral mucus. Moreover, healthy and bleached coral mucus is also used to evaluate antibacterial activity on the pandemic strain of Vibrio parahaemolyticus and identify the ability of cell cytotoxicity to HCT116 colon cancer cells. The coral surface mucus layer (SML) of healthy coral exhibited the ability of inhibition to the growth of the disease strain is higher than that of bleached coral at all concentrations (10 – 30 µL). The cytotoxicity of colon cancer cell line HCT116 was also clearly observed when treated with healthy SML. Comparison of cytotoxicity of two mucus types shows that healthy coral mucus has inhibition to colon cancer cell line to be 1.5 times higher than mucus is taken from bleached coral. The composition of the microbial community changes when corals transfer from a healthy state to a bleached one. Consequently, antibacterial activity and cytotoxicity also come down.
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