2021年2月乌克兰新爆发covid-19时sars-cov-2谱系的鉴定和特征b.1.1.7

V. Kashuba, N. Hryshchenko, G. Gerashchenko, N. Melnichuk, T. Marchishak, S. Chernushyn, L. Chernenko, V. K. Liashko, Z. Tkachuk, M. Tukalo
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引用次数: 1

摘要

的目标。利用全基因组基因分型技术鉴定和表征在乌克兰伊万诺-弗兰基夫斯克地区新一波COVID-19疫情中收集的SARS-CoV-2变异体。方法。使用Ion GeneStudio S5 Plus系统对从19例患者鼻咽拭子中分离的加工RNA进行平行全基因组测序。结果。所有鉴定的SARS-CoV-2基因型均为20I/501Y。V1分支,变种VUI202012/01 GRY (B.1.1.7谱系)。在分析的病毒变异中发现了47种不同的突变。除了创始人20I/501Y。V1错义突变,检测到一些独特的改变,包括SARS-CoV-2的- n蛋白,这些可能具有临床和流行病学相关性。结论。目前在乌克兰爆发的COVID-19疫情不仅与病毒传播的季节性波动有关,而且还与B.1.1.7等更具侵略性的毒性变异的出现有关,这些变异基本上取代了以前的毒株,并影响到年轻人群。
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Identification and characterization of the sars-cov-2 lineage b.1.1.7 upon the new outbreak of the covid-19 in Ukraine in february 2021
Aim. To identify and characterize the SARS-CoV-2 variants, collected upon the new wave of COVID-19 outbreak in Ivano-Frankivs’k region of Ukraine, using the whole genome genotyping. Methods. The parallel whole genome sequencing was performed on the processed RNA, isolated from nasopharyngeal swabs of 19 patients, using an Ion GeneStudio S5 Plus System. Results. All the identified SARS-CoV-2 genotypes were referred to 20I/501Y.V1 clade, the variant VUI202012/01 GRY (the B.1.1.7 lineage). In the analyzed virus variants forty-seven various mutations were found. Besides the founder 20I/501Y.V1 missense mutations, several unique alterations were detected, including those in the S-and N-proteins of SARS-CoV-2, that might have clinical and epidemiological relevance. Conclusions. The current wave of the COVID-19 outbreak in Ukraine is associated not only with seasonal fluctuations in the virus transmission, but also with the emergence of more aggressive virulent variants, such as B.1.1.7, which basically displaced previous strains and affects the younger population.
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