利用16S rRNA技术鉴定屠宰厂废水中细小芽孢杆菌

Sulaiman Mohammed, Yusuf Garba Yusuf, A. Mahmoud, I. Muhammad, F. Huyop
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引用次数: 0

摘要

屠宰场是最明显但却被忽视的高顽固性废水来源之一,这些废水对环境构成了许多挑战,并对人类造成了危害。然而,对屠宰场废水中细菌的分子鉴定报道甚少。本研究旨在从屠宰场废水中分离和鉴定最丰富的细菌种类。收集废水样品,用革兰氏染色法和镜检法分离鉴定最丰富的细菌。从分离的细菌中提取基因组DNA (gDNA),进行16S rRNA PCR扩增。另外8个芽孢杆菌种和1个外群之间的多序列和系统发育关系通过比较NBCI的序列数据推断出来。生化鉴定结果表明,该菌为革兰氏阳性,呈乳黄色,呈芽孢杆菌状。16S rRNA和生物信息学分析表明,分离到的细菌数量最多的是短小芽孢杆菌(Bacillus pumilus),鉴定率为99%。此外,系统发育树分析发现,本研究鉴定的细菌与芽孢杆菌物种关系更密切,因为它们具有相同的进化枝。该序列与基因库中其他已存序列相比是不完整的。本研究对尼日利亚屠宰场废水的微生物种类进行了分子鉴定。同时也为废水的潜在处理提供了线索。
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Molecular Identfication of Bacillus pumilus by 16S rRNA From Abattoir Wastewater
Abattoir is one of the most pronounced but yet ignored sources of highly recalcitrant wastewater that pose many environmental challenges and cause harm to mankind. However, little was reported on the molecular identification of bacterial committee from the abattoir wastewater. This study aimed at isolation and molecular identification of most abundant bacterium species from wastewater of abattoir. Wastewater sample was collected, isolate and identify the most abundant bacterium by gram staining and microscopy. Genomic DNA (gDNA) was extracted from the isolated bacterium and conducted 16S rRNA PCR amplification. Multiple sequence and phylogenetic relationship among other 8 Bacillus species and 1 outgroup was inferred by comparing the sequence data sets from NBCI. The biochemical identification analyses indicated that the bacterium is gram positive with Bacillus shape and cream-yellow colour. 16S rRNA and bioinformatics analyses demonstrated that the most abundant isolated bacterium is Bacillus pumilus with 99% identification. Moreover, the phylogenetic tree analysis discovered that the identified bacterium from this study is more closely related to Bacillus species as they share the same clade. The sequence is partial as compared with the other deposited sequences in the GeneBank. This study provide an insight on the microbial species of Nigeria abattoir wastewater which was identified using molecular approach. As well, gave a clue for potential treatment of the wastewater.
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来源期刊
CiteScore
1.20
自引率
0.00%
发文量
13
审稿时长
16 weeks
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